Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02011 ATGGCGACGTACTTCCATGGAAACTCCGAAATCCAACCGCCTGACGGATTGCAAACCCTAATCCTGATGAATCCCGGCTACATCCAGTACTCCGACACACCCCCACCGGCCTCTAGCAACCTAGTATTCTTCAACTCTCATGTCGGGAATCCTCTCTATTTGCCCAATCTGCCTCACGCGCCGCTATCGCAACCTCAGCACTTGGTTGGTATCCCTCTTTCCGCCGCCACCACCTCGGACCCGAACTCTCTATCCTCGCACAGCCACCATGATGTTTCTCCCTTGCATGGCTTCATCCAACGCTCCCAAAATAGGTTTTGTAGCTCAAATGATCATCTCTCGACGGTGGCGCGTGATAGCCCACGCCCTAAGGAAGGACTGTCCCTTACCCTCTCATCTCATCAGCCAGGGTATGGATTAGTCCGAATTCCATCTGAAGCTCAACAGGAAGTTTCCGGCGAGGATGTGCACATTGCAGGTGGATCCTCCTCTGCTTCCGGCGTCTCACTTCCGGCAGTGCGGAGCATATCACTGAGCTCGAAGTACTCAAGAGCGGCTCAGGAGCTTCTTGATGAGGTGGCAAACGTCGGCAATAATGGAGTTAAGAAAGAGACCTTGAAGAAGGCCGATGATCGACGGACTAAGCAGGAGGAAGAGTCATTGGCACTCGCCAGAGACAAAACGGATGGAGTGGAAGACACAGCGAAGACCAGTCCAGAGCTTTCGGCCGCCGAGAGGCAAGAAATTCAGATGAAGAAGGCCAAGTTTATTAACATGCTTGATGAGGTGGAGCAAAGATACAGACGGTATCATCATCAAATGCAGATTCTGGTTTCCTCTTTCGAACAAGCAGTTGGAATAGGCTCTGCAAGAACTTACACAGCCCTCGCGCTTCAGACCATCTCGAAGCAATTCAGATGCTTAAAAGACGCAATCAATGTCCAAATTCAAGTGGCAAACAAGAACTTAGGCAAAGAGGACTGCCATGGCAGCAAACTAAGACTTGTAGACCATCAGTTTCATCAACAACGGGCTCTACAGAACTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAGAGATCGGTTTCTGTTCTTCGAGCCTGGCTATTCGAACATTTTCTTCACCCGTATCCAAAAGATTCAGACAAGCAAATGCTGGCGAGACAGACAGGACTCGCTAGGAGTCAGGTTTCAAATTGGTTCATCAATGCTCGAGTTCGTCTGTGGAAGCCGATGGTAGAAGACATGTACATGGAAGAAATCAAGGAGCGAGAACAGAACTTATCAGCAGACAAAACCAGCAAGAACAATGAGAATACGACTTCCAAATTCACAACACCAACTCCACAAGACAAAAATCATGCAATTGATAACCAGCTTCCGAGTTTCAACTCAAAACAGGACGATCTTTCCCATCTTCACCCTCGCCCGGCAATTTCCTTTTCTTCATCGGCTTCGTCACTGGAAGCTGTAAATGTTCGAAGCCAATCTGGGTTTTGGCTAATTGGGTCATCGGAACTTGATGGAATCACACAAGGAAGTCCAAAGAGACAACGGATTGATGAACTGATGCAGTCCCCAAACAGTATTCCTATAAACATTGACGCTAAGCCAGGGGAAGCCAATAATGAGCACATTCCAATGAAGTTTAACAGCGATAGGCATGGCAGAGATGGATATTCCATCATTGCAGGTCAAGCTAATTTCATTGGAGGTTTCGAGCAGTACCCAATTACAGATATTGAAAGGTTTGATGCTGAGCCATTCACAACAGGATTTTCCGGCAATGGTGTTTCTCTCACTCTTGGTCTTCCCCACTCTGAAAATCTCACGCTATCGGTTGCCAACCATACTTTCCTTCCAAATCAAAACATAAATTTTGGAAGAAACGGTTTCGACCCTATTGACATATCAACACCACACTCTACATCTGCATTCGGGAACATCGATGTACAAAACCGAAAACAATTGGTTGCACAATTGTTGCCCGACTTTGTGACCTGA 2022 47.53 MATYFHGNSEIQPPDGLQTLILMNPGYIQYSDTPPPASSNLVFFNSHVGNPLYLPNLPHAPLSQPQHLVGIPLSAATTSDPNSLSSHSHHDVSPLHGFIQRSQNRFCSSNDHLSTVARDSPRPKEGLSLTLSSHQPGYGLVRIPSEAQQEVSGEDVHIAGGSSSASGVSLPAVRSISLSSKYSRAAQELLDEVANVGNNGVKKETLKKADDRRTKQEEESLALARDKTDGVEDTAKTSPELSAAERQEIQMKKAKFINMLDEVEQRYRRYHHQMQILVSSFEQAVGIGSARTYTALALQTISKQFRCLKDAINVQIQVANKNLGKEDCHGSKLRLVDHQFHQQRALQNLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLARQTGLARSQVSNWFINARVRLWKPMVEDMYMEEIKEREQNLSADKTSKNNENTTSKFTTPTPQDKNHAIDNQLPSFNSKQDDLSHLHPRPAISFSSSASSLEAVNVRSQSGFWLIGSSELDGITQGSPKRQRIDELMQSPNSIPINIDAKPGEANNEHIPMKFNSDRHGRDGYSIIAGQANFIGGFEQYPITDIERFDAEPFTTGFSGNGVSLTLGLPHSENLTLSVANHTFLPNQNINFGRNGFDPIDISTPHSTSAFGNIDVQNRKQLVAQLLPDFVT 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74608352 74610693 + Bma002804.1 Bma01g02011 76528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02011 673 Coils Coil 246 266 - -
Bma01g02011 673 SMART HOX_1 357 421 IPR001356 GO:0003677
Bma01g02011 673 MobiDBLite consensus disorder prediction 438 466 - -
Bma01g02011 673 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 638 - -
Bma01g02011 673 CDD homeodomain 357 418 IPR001356 GO:0003677
Bma01g02011 673 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Bma01g02011 673 Pfam Associated with HOX 178 312 IPR006563 -
Bma01g02011 673 SMART prehox3 170 314 IPR006563 -
Bma01g02011 673 MobiDBLite consensus disorder prediction 205 242 - -
Bma01g02011 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 638 - -
Bma01g02011 673 MobiDBLite consensus disorder prediction 431 466 - -
Bma01g02011 673 Gene3D - 353 432 - -
Bma01g02011 673 SUPERFAMILY Homeodomain-like 358 424 IPR009057 -
Bma01g02011 673 Coils Coil 424 444 - -
Bma01g02011 673 MobiDBLite consensus disorder prediction 205 234 - -
Bma01g02011 673 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02011 Bma04g01538 CCT
Bma01g02011 Bma10g00129 CCT
Bma01g02011 Bma04g00527 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02011 Bma-Chr1:74608352 Bma01g02340 Bma-Chr1:81010313 1.04E-88 dispersed
Bma01g02011 Bma-Chr1:74608352 Bma10g00129 Bma-Chr10:1167298 0 wgd
Bma01g02011 Bma-Chr1:74608352 Bma04g00527 Bma-Chr4:4641565 0 wgd
Bma01g02011 Bma-Chr1:74608352 Bma04g01538 Bma-Chr4:51436269 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56754 PF07526 POX 9.10E-45 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02011 - - jre:108982860 789.645