Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02014 ATGAACGACTTGCTTTCCTCTACTTCATTCCCCAGGGATGAACACGTCATCGAGATGACAGGATCGCCGGCATCCTCTCCGGCTGGCCATATGAGGAAATTCTTCAACGACGTCGAAGCCATTAAGGAAGATCTTAGGGAGCTGGAACTCCTCCGTGAAAATCTGCAGAACTCTCACGAGAAGAGCAAAGCTCTTAACAGCCCTAAGGCGGTGAAAGAGCTCCGGTCAAAAATGGACGCGGACGTTTCTCTGGCTCTGAGCAAGGCGAAGCTGATCAAGGCTCAGCTCGAGGCTCTCGACCGATCAAACGTCGCGAATCGCAATTTGCCTGGTTGGGGCGTCGGGTCGTCGTCGGACCGAACGCGAACCTCTGTAGTGAATGGGCTGAGAAAGAATTTAAAGAACTCGATGGAGAGCTTTACCGCTCTGAGGGAGAAGATCTCGTCGGAGTATAGAGACACCGTGCAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAGACCATTGATCTATTGATCTCCACTGGCGAAAGCGAGACGTTCTTACAGAAAGCAATACAAGAGGCTGATTCGATGATCAAAGACGGTACCCGCCAGTTGCAGACGGCGAGGACCCTCCAGAAGAACACAAGAAAATGGATTATTATTGCCATCATCATTTTGCTGGTCATCATCTTCATTCGCCGTTCTCAGTGCTCAGCCATGGAAGTAGGAAGATCTCTTCTCTTGCGAGCCTTTGAGTGTGTACTGTTTTCCATTTTATTGGTTTCTTCTTCAAATCTTTCCATCCCCACGTGA 807 49.81 MNDLLSSTSFPRDEHVIEMTGSPASSPAGHMRKFFNDVEAIKEDLRELELLRENLQNSHEKSKALNSPKAVKELRSKMDADVSLALSKAKLIKAQLEALDRSNVANRNLPGWGVGSSSDRTRTSVVNGLRKNLKNSMESFTALREKISSEYRDTVQRRYFTVTGENPDEKTIDLLISTGESETFLQKAIQEADSMIKDGTRQLQTARTLQKNTRKWIIIAIIILLVIIFIRRSQCSAMEVGRSLLLRAFECVLFSILLVSSSNLSIPT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74718270 74719806 + Bma002809.1 Bma01g02014 76531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02014 268 MobiDBLite consensus disorder prediction 1 30 - -
Bma01g02014 268 Gene3D - 29 161 - -
Bma01g02014 268 Pfam Syntaxin 33 195 IPR006011 GO:0016020
Bma01g02014 268 Gene3D - 168 232 - -
Bma01g02014 268 SMART SynN_4 26 152 IPR006011 GO:0016020
Bma01g02014 268 Coils Coil 31 65 - -
Bma01g02014 268 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 8 191 - -
Bma01g02014 268 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 192 243 - -
Bma01g02014 268 PANTHER SYNTAXIN 8 191 IPR045242 -
Bma01g02014 268 PANTHER SYNTAXIN 192 243 IPR045242 -
Bma01g02014 268 SUPERFAMILY t-snare proteins 30 193 IPR010989 GO:0016020|GO:0016192
Bma01g02014 268 CDD SynN 31 188 IPR006011 GO:0016020
Bma01g02014 268 Pfam SNARE domain 189 230 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02014 Bma-Chr1:74718270 Bma07g00353 Bma-Chr7:4463222 2.74E-65 dispersed
Bma01g02014 Bma-Chr1:74718270 Bma10g00132 Bma-Chr10:1190775 1.61E-91 wgd
Bma01g02014 Bma-Chr1:74718270 Bma04g00526 Bma-Chr4:4618116 4.38E-113 wgd
Bma01g02014 Bma-Chr1:74718270 Bma04g01535 Bma-Chr4:51364686 1.84E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02014 K08486 - csv:101208931 268.085