Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02016 ATGAACAACACAGACTACCCCGGCTTTCTCCCCACCAGCAACATCAGCGGCGTCGGCTATGGAATCGGGGTCTCTGTCGGTCTTCTCCTCCTCATCACTACCATCGTCCTCGCTTCCTACTTCTGCTCCCGACCAGCTAACCGGACGTCTCCTTCTGCCGGTATTAGGAGGACGAGGATGACCCAGCAGTTTACGGGAAGCGCTGAGGTGGTGCTTGAAATAGGACTTAGCGAGGAAACGATCGAAAGCTACCCGAAGATGGTGTTTTCAGAGGCGAAGATGGAGAGGAAAGAGGGAATAGCTACGAGCTGCTCCATCTGTTTAGGTGATTATAGAAGCTCCGACGTGCTCCGGCAATTGCCGGATTGTCGCCATTTTTTCCACCTGAAATGTGTTGATCCGTGGCTGAGGCTTAATCCATCTTGTCCACTCTGTAGAACATCGCCGTATCCGACGCCACTTTCGACTCCTCTAGCGGAGGTTGTTCCATTAGCCAGTAGCAGAGATCGGTAG 513 53.02 MNNTDYPGFLPTSNISGVGYGIGVSVGLLLLITTIVLASYFCSRPANRTSPSAGIRRTRMTQQFTGSAEVVLEIGLSEETIESYPKMVFSEAKMERKEGIATSCSICLGDYRSSDVLRQLPDCRHFFHLKCVDPWLRLNPSCPLCRTSPYPTPLSTPLAEVVPLASSRDR 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74750104 74750616 + Bma002811.1 Bma01g02016 76533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02016 170 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 169 - -
Bma01g02016 170 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Bma01g02016 170 CDD RING-H2_PA-TM-RING 104 146 - -
Bma01g02016 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Bma01g02016 170 Pfam Ring finger domain 103 146 IPR001841 -
Bma01g02016 170 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 169 IPR045899 -
Bma01g02016 170 SUPERFAMILY RING/U-box 80 152 - -
Bma01g02016 170 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02016 Bma-Chr1:74750104 Bma05g01188 Bma-Chr5:50980454 6.06E-37 dispersed
Bma01g02016 Bma-Chr1:74750104 Bma03g00018 Bma-Chr3:226201 6.93E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02016 - - mdm:103454174 195.667