Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02036 ATGCAGTCTGATAACTCGGAGCTCCACCGGTTGCTCGCTGCAAATGGTTTCTTCGACGTCGGACGTCAAAGCTTGTGCAGCTCTTCCTCGTACTATCCTGTCGATCAAGTTTCTGCAATTTCAGATACGCTTCCACCTCTCAATGAAAAAGCTCTCGCTGCTCTCAGAAATCATAAGGAGGCTGAGAAAAAAAGGAGGGAGAGGATAAATTCTCATCTCGATAAACTAAGGAATCTTCTTCCCTGTAATTCCAAGACCGACAAAGCTTCTCTTCTTGCAAATGTTGTTCAACGCGTGAAAGATCTAAAGCAACAAGCTTCTGAAATCTCTGGGATCGAGACTTTCCCATCAGAAATTGATGAAATCTCTGTGCATTCCGGCAATTATTCCGGGGACGGGAGAACGATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCGGACCTAATACCAGACCTCATCCAGATCCTAAACTCTCTCCACTTGAAGACTCTCACAGCAGAAGTGGCAACTCTCGGAGGAAGAATCAGAAACGTTCTCGTTGTCGCCCCAGAAAAAGATTGCAGCGTTGAATCAGTCCATTTCCTACAAAACTCGTTAAGATCACTGCTAGACAGCTCAAATTCGAGCGAGCGATCAAAGAGAAGACGTGTTTTGGATCCCAATGACATATCTTGA 678 45.28 MQSDNSELHRLLAANGFFDVGRQSLCSSSSYYPVDQVSAISDTLPPLNEKALAALRNHKEAEKKRRERINSHLDKLRNLLPCNSKTDKASLLANVVQRVKDLKQQASEISGIETFPSEIDEISVHSGNYSGDGRTIFKASLCCEDRSDLIPDLIQILNSLHLKTLTAEVATLGGRIRNVLVVAPEKDCSVESVHFLQNSLRSLLDSSNSSERSKRRRVLDPNDIS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 75137718 75138890 + Bma002839.1 Bma01g02036 76553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02036 225 Coils Coil 59 79 - -
Bma01g02036 225 CDD bHLH_AtAIG1_like 49 124 - -
Bma01g02036 225 SMART finulus 59 108 IPR011598 GO:0046983
Bma01g02036 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 110 IPR036638 GO:0046983
Bma01g02036 225 Gene3D - 47 111 IPR036638 GO:0046983
Bma01g02036 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Bma01g02036 225 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 221 - -
Bma01g02036 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Bma01g02036 225 PANTHER TRANSCRIPTION FACTOR BHLH30 4 221 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02036 Bma-Chr1:75137718 Bma01g02706 Bma-Chr1:84459351 1.15E-46 dispersed
Bma01g00151 Bma-Chr1:1416665 Bma01g02036 Bma-Chr1:75137718 1.34E-49 transposed
Bma03g00178 Bma-Chr3:1362116 Bma01g02036 Bma-Chr1:75137718 1.34E-21 transposed
Bma01g02036 Bma-Chr1:75137718 Bma04g00504 Bma-Chr4:4436374 1.34E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56757 PF00010 HLH 2.00E-10 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02036 - - jcu:105643894 288.5