Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02062 ATGGTTTCAGCAGAAATGGGGAGAGGAAAAATAGAGATAAAGAGGATTGAAAACACCACCAATCGGCAGGTCACATTCTGCAAGCGAAGGAATGGACTTTTGAAGAAAGCTTATGAGCTTTCAGTTCTCTGTGATGCTGAAGTTTCTCTCATTGTCTTCTCCAGTCGTGGTCGCCTCTATGAATATTCGAACAACAGTGTGAAGTCCACCATAGAGAGGTACAAGAAAGCAAACTCTGATAGCTCCACTACCAGCTCTATTACAGAACTTAATACTCAATATTATCAGCAAGAATCTGCAAAGCTGCGTCAACAAATACAAATGATGCAAAATTCTAACAGGCACTTGATGGGCGATTCCTTGAGCTCTCTAACAGTGAAAGAACTAAAGCAGCTTGAAAATCGCCTTGAACGAGGCATCACTAGAATCAGATCCAAAAAGCATGAAATGCTGCTAGCAGAAATTGAATACTTGCAGAAAAGGGAGATTGAGATGGAGAATGAAAATGTTTATCTTCGAACAAAGATTGCAGAAGTTGAAAGATTTCAACAAACAGACATGGTATCTGGGCAAGAGTTAAATGCGATCCATGCATTAGCTTCTCGAAATTTCTTTACTTCTAATATGGTTGAGGACGGATCTGCATCATTCCCTCACCAAGACAAGAAGATTCTCCATCTTGGGTGA 687 40.32 MVSAEMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIERYKKANSDSSTTSSITELNTQYYQQESAKLRQQIQMMQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIEMENENVYLRTKIAEVERFQQTDMVSGQELNAIHALASRNFFTSNMVEDGSASFPHQDKKILHLG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76049137 76063804 + Bma002872.2 Bma01g02062 76579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02062 228 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02062 228 SUPERFAMILY SRF-like 7 85 IPR036879 GO:0003677|GO:0046983
Bma01g02062 228 Gene3D - 18 94 IPR036879 GO:0003677|GO:0046983
Bma01g02062 228 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 Pfam K-box region 91 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02062 228 ProSitePatterns MADS-box domain signature. 8 62 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 7 218 - -
Bma01g02062 228 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bma01g02062 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 218 - -
Bma01g02062 228 CDD MADS_MEF2_like 7 78 IPR033896 GO:0000977|GO:0045944
Bma01g02062 228 Coils Coil 129 149 - -
Bma01g02062 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02062 Bma04g01517 CCT
Bma01g02062 Bma10g00204 CCT
Bma01g02062 Bma04g01517 ECH
Bma01g02062 Bma10g00204 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02062 Bma-Chr1:76049137 Bma12g00686 Bma-Chr12:29282056 5.77E-97 dispersed
Bma10g01180 Bma-Chr10:41770526 Bma01g02062 Bma-Chr1:76049137 9.70E-43 dispersed
Bma01g02062 Bma-Chr1:76049137 Bma01g01093 Bma-Chr1:11526000 8.21E-48 transposed
Bma01g02062 Bma-Chr1:76049137 Bma06g01341 Bma-Chr6:50356222 4.69E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56759 PF01486 K-box 1.90E-27 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02062 K09264 - csv:101208072 380.563