Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02074 ATGGCCTCCCACCTTTCTTTTTCCATCATCTTTTTCTTCATCTCTCTTCTCCCTTTCTCCTTCACTCACATCGACGCTCAACAATCTGACTCAAAGGAGTTCGTCCTCACTTTGGATCACTCCAACTTCTCCCACACCGTCAGCAACCACGATTTCATCGTCGTTGAGTTCTACGCCCCATGGTGCGGACACTGTAAAAGCCTGGCACCAGAGTATGAGAAGGCAGCATCTATATTGAGTGCTCATGATCCTCCAGTGGTTTTAGCAAAAGTTGATGCTAATGAAGAAGCGAACAAAGAACTTGCAAGTGACTTCGAAATTAAGGGTTTTCCCACTCTAAAGATTCTGAGAAATGGAGGAAAGACTGTTCAAGAATACAAGGGTCCTCGTGAAGCAGATGGGATTGTTGAATATTTAAAGAAACAAAGTGGGCCAGCATCCGCTGTAATAAATTCTGTGGAAAGTGCTAGCAATATAATATCTGACAAGAAAATCGTTGGTATATTCCCGAAATTTTCAGGAGAGGAGTTTGAGAACTATACCACCCTAGCTGAGAAATTGCGTTCGGATTATGAATTTGCTCATACTTTAAATGCCAAAGTACTTCCGAGGGGGGAAACATCTGTGACTGGTCCCTCAATTAGGTTGTTGAAGCCATTTGATGAATTATTTGTTGATTCTGAGGTTGCTGCTACATTCCTTGAAAAGTTCATTGAAGAATCTAGTGTTCCTGTTGTGACTGTATTCGATAAGGACCCTATGAATCACCCTTTTGTTATCAAGTTCTTCAATAATGCCAACGTAAAGGCCATGCTGTTCATTAATTTCACTGATGATGTGGCGGAATCTTTCAAGTCCAAATACCATGAAGTTGCTCAGCAATTCAAAGGAGAGGGCATAAGCTTTCTGATTGGAGACATTGAGTCTAGTCAAGGTGCCTTCCAGTACTTTGGGCTTAAAAGTGATCAAGTCCCTCTTATCATCATACAAACTAACGACGGACAAAAATACTTGAAACCAAATTTGGATCCCAATTCCATTGCCTCTTGGTTGAAGGAATACAAGGAGGGAAAATTGTCAGCATTCAAAAAGTCGGAACCCCTCCCCGAGCATAACAATGAACCTGTAAAAGTGGTTGTTGCCGATAGCCTCCAAGACATAGTGTATAACTCTGGAAAAAATGTTCTTCTAGAGTTTTATGCTCCTTGGTGTGGGCATTGCAAAAAATTGGCTCCCATCTTGGATGAAGTCGCGGTCTCTTTGGAAAATGATAATGATATCATAATCGCTAAGTTTGATGCTACTGCAAATGACTACCCAACTGACACCTTTGATGTCAAGGGCTACCCTACCTTGTATTTTAAGTCAGCTAGTGGAAAGCTGGTGCAGTATGAAGGGGAGAGAAGCAAGGAAGATATCATAGAATTCATTGGAAACAACCGAGATAAAGCTTCCAAGATCGAATCGGTGGAAAAGAATGTCCAGGAAGACTCGGACTCAAAGGATGAGCTATAA 1515 41.65 MASHLSFSIIFFFISLLPFSFTHIDAQQSDSKEFVLTLDHSNFSHTVSNHDFIVVEFYAPWCGHCKSLAPEYEKAASILSAHDPPVVLAKVDANEEANKELASDFEIKGFPTLKILRNGGKTVQEYKGPREADGIVEYLKKQSGPASAVINSVESASNIISDKKIVGIFPKFSGEEFENYTTLAEKLRSDYEFAHTLNAKVLPRGETSVTGPSIRLLKPFDELFVDSEVAATFLEKFIEESSVPVVTVFDKDPMNHPFVIKFFNNANVKAMLFINFTDDVAESFKSKYHEVAQQFKGEGISFLIGDIESSQGAFQYFGLKSDQVPLIIIQTNDGQKYLKPNLDPNSIASWLKEYKEGKLSAFKKSEPLPEHNNEPVKVVVADSLQDIVYNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSLENDNDIIIAKFDATANDYPTDTFDVKGYPTLYFKSASGKLVQYEGERSKEDIIEFIGNNRDKASKIESVEKNVQEDSDSKDEL 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76166100 76170942 - Bma002884.1 Bma01g02074 76591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02074 504 CDD PDI_b_family 147 240 - -
Bma01g02074 504 CDD PDI_b'_family 259 355 - -
Bma01g02074 504 Gene3D Glutaredoxin 22 142 - -
Bma01g02074 504 ProSitePatterns Thioredoxin family active site. 396 414 IPR017937 -
Bma01g02074 504 TIGRFAM ER_PDI_fam: protein disulfide isomerase 35 504 IPR005792 GO:0003756
Bma01g02074 504 ProSiteProfiles Thioredoxin domain profile. 362 482 IPR013766 -
Bma01g02074 504 ProSiteProfiles Thioredoxin domain profile. 15 144 IPR013766 -
Bma01g02074 504 CDD PDI_a_PDI_a'_C 375 477 - -
Bma01g02074 504 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Bma01g02074 504 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Bma01g02074 504 SUPERFAMILY Thioredoxin-like 241 373 IPR036249 -
Bma01g02074 504 PANTHER PROTEIN DISULFIDE ISOMERASE 8 490 - -
Bma01g02074 504 PRINTS Thioredoxin family signature 106 117 - -
Bma01g02074 504 PRINTS Thioredoxin family signature 53 61 - -
Bma01g02074 504 PRINTS Thioredoxin family signature 61 70 - -
Bma01g02074 504 SUPERFAMILY Thioredoxin-like 342 483 IPR036249 -
Bma01g02074 504 TIGRFAM pdi_dom: protein disulfide-isomerase domain 380 479 IPR005788 GO:0003756
Bma01g02074 504 TIGRFAM pdi_dom: protein disulfide-isomerase domain 39 142 IPR005788 GO:0003756
Bma01g02074 504 Gene3D Glutaredoxin 245 362 - -
Bma01g02074 504 Pfam Thioredoxin 35 141 IPR013766 -
Bma01g02074 504 Pfam Thioredoxin 376 477 IPR013766 -
Bma01g02074 504 Gene3D Glutaredoxin 363 501 - -
Bma01g02074 504 CDD PDI_a_family 36 139 - -
Bma01g02074 504 Pfam Thioredoxin-like domain 169 353 - -
Bma01g02074 504 PANTHER PROTEIN DISULFIDE-ISOMERASE 8 490 - -
Bma01g02074 504 Gene3D Glutaredoxin 143 244 - -
Bma01g02074 504 SUPERFAMILY Thioredoxin-like 148 244 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02074 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - vvi:100259138 749.584
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02074 Bma02g00216 CCT
Bma01g02074 Bma01g00810 CCT
Bma01g02074 Bma02g00216 ECH
Bma01g00810 Bma01g02074 ECH
Bma01g02074 Bma01g00810 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00810 Bma-Chr1:7594493 Bma01g02074 Bma-Chr1:76166100 0 dispersed
Bma01g02074 Bma-Chr1:76166100 Bma14g00461 Bma-Chr14:5271393 1.53E-64 dispersed
Bma14g01743 Bma-Chr14:37503194 Bma01g02074 Bma-Chr1:76166100 1.45E-11 dispersed
Bma01g02074 Bma-Chr1:76166100 Bma02g00216 Bma-Chr2:2311589 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48