Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02084 | ATGGGGAGAGGAAAGATCGAGATCAAGAGGATAGAAAACTCAAGTAACAGGCAGGTGACTTGCACAAAAAGAAGGAATGGGTTGTTGAAGAAAGCCAAAGAGATTACTACTCTGTGCGATGCTAAAGTTTCCCTCGTTATCTTTGATGCTACTGGAAAGATGCTTGAATTCCATAGCCCTTCCACACCTTTGATTAATATCTTGGATAAGTATAACAAGAAGTCTGAAAAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGGATCAAGAAAGAAAACGACAGCATGCAGAACGAGCTCAGGCATATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCACTCGAAAACGCCCTCGAAAACGGCCTCAACGGTGTTCGTGAGAAACAGTCTGAGTTCATGAAAATGGTGAGGGACAACGGAAAAATGCTGGAAGAGGAGAACAAAAGACTCAGCTATGAGCTGGTAAAATACATCTCCATAATTCCCTGTCTCGTATAA | 528 | 43.18 | MGRGKIEIKRIENSSNRQVTCTKRRNGLLKKAKEITTLCDAKVSLVIFDATGKMLEFHSPSTPLINILDKYNKKSEKRLWDAKHENLSNEIDRIKKENDSMQNELRHMKGEDLTSLNYKELMALENALENGLNGVREKQSEFMKMVRDNGKMLEEENKRLSYELVKYISIIPCLV | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 76428846 | 76430205 | - | Bma002900.1 | Bma01g02084 | 76601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02084 | 175 | CDD | MADS_MEF2_like | 2 | 80 | IPR033896 | GO:0000977|GO:0045944 | |
Bma01g02084 | 175 | Pfam | K-box region | 82 | 163 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma01g02084 | 175 | Gene3D | - | 13 | 111 | IPR036879 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | Coils | Coil | 77 | 111 | - | - | |
Bma01g02084 | 175 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 165 | - | - | |
Bma01g02084 | 175 | ProSiteProfiles | K-box domain profile. | 84 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma01g02084 | 175 | PANTHER | FLORAL HOMEOTIC PROTEIN PISTILLATA | 1 | 165 | - | - | |
Bma01g02084 | 175 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma01g02084 | 175 | SUPERFAMILY | SRF-like | 2 | 96 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02084 | Bma-Chr1:76428846 | Bma09g00098 | Bma-Chr9:2633901 | 6.56E-42 | dispersed | |
Bma01g02084 | Bma-Chr1:76428846 | Bma01g02089 | Bma-Chr1:76663749 | 6.68E-105 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56763 | PF01486 | K-box | 2.20E-19 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02084 | K09264 | - | csv:101222239 | 270.011 |