Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02089 ATGGGGAGAGGAAAGATCGAGATCAAGAGGATAGAAAACTCAAGTAACAGGCTGGTGACTTTCACAAAAAGAAGGAATGGGTTGTTGAAGAAAGCCCAAGAGATTGCTATTCTGTGCGATGCTCAAGTTTCCCTCGTTATCTTTGCTGCTACTGGAAAGATGCATGAATACCATAGCCCTTCCACACCTTTGATTGATATCTTGGATAAGTATAACAAGGAGTCTGGAAAGAGGCTATGGGATGCTAAGCATGAGAACCTTAGCAATGAAATCGATCGGATCAAGAGAGAAAACGACAGCATGCAGATCGAGCTCAGGCATATGAAGGGAGAGGATCTCACCTCCTTGAACTACAAGGAGCTCATGGCCCTCGAAAACGCCCTCGAAAACGGCCTCAACGGTGTTCGTGAGAAACAGTCCGACTTCATGAAAATGGTGAGGGACAACGGAAAAATGCTGGAAGAGGAGAACAAAAGACTCAACTATGAGCTGTACCAGAAGGAGATGGTGGGGATGGGAGAGAACGTAAGAGAGATGGAAAATGGGTACCAGCAGAGGATGAGGGAGTTCAATGAGCTGCCATTTTCATTCAGAGTTCAGCCAATTCAGCCTAATCTGCAAGAGAAGATCTAA 633 45.5 MGRGKIEIKRIENSSNRLVTFTKRRNGLLKKAQEIAILCDAQVSLVIFAATGKMHEYHSPSTPLIDILDKYNKESGKRLWDAKHENLSNEIDRIKRENDSMQIELRHMKGEDLTSLNYKELMALENALENGLNGVREKQSDFMKMVRDNGKMLEEENKRLNYELYQKEMVGMGENVREMENGYQQRMREFNELPFSFRVQPIQPNLQEKI 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76663749 76665847 + Bma002910.1 Bma01g02089 76606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02089 210 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02089 210 PANTHER FLORAL HOMEOTIC PROTEIN PISTILLATA 1 209 - -
Bma01g02089 210 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g02089 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bma01g02089 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
Bma01g02089 210 Coils Coil 77 111 - -
Bma01g02089 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma01g02089 210 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bma01g02089 210 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Bma01g02089 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02089 Bma-Chr1:76663749 Bma09g00098 Bma-Chr9:2633901 1.11E-42 dispersed
Bma15g00963 Bma-Chr15:36735011 Bma01g02089 Bma-Chr1:76663749 3.56E-30 dispersed
Bma01g02084 Bma-Chr1:76428846 Bma01g02089 Bma-Chr1:76663749 6.68E-105 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56764 PF01486 K-box 7.00E-19 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02089 K09264 - csv:101222239 353.984