Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02090 ATGGGTTCATACGACTGTACCACTGTGGTCGGCGAGCCGATGTGTGGCCCTACTATTGTGGATTTTTCAGAGAAACTTGTTTCTGAACATCAGCCATGCCCGAGCTCGGGTTCAGTTTATTGTTTGTTGGAAGCTAATTCAAATGAGGTAGATAACTGCCCCATTTTAAGTAGGGATGATATCCTGCCGACTGATGATTGGTTGGTGACTCAATGTGAGAATGCTGACGAGTCAATTCTCTCAAATGAACTGTATTCTAAGTGTGGGATTAGTGACGTCTCTTTGGATGAGAATCGGGTTGAAACTGATGCTTGCAATATGAAGAGTGGAAAGTTGATGCAATGTAATAAGTATGGATTGTTGAACACGACTGATGGCTTTAAATTGACCTCAGAAATCATTGCGAGTGATACCTCATCTGGATTTTTTATTCAACAAAATGAAGAGAATGCCAATAATAGTGTTGGTGGTTCTCCTGAAACAATAGTAAAAGAGGTTATGGAAGAAAAAAAATTTGATTTAATTGAGATAGAGGCTGATACTGGTGGATTATTATCACCTTCACGTGGCAGTGAGATTTCCTTGAACTCAATGGTTCCTTTAATAAATTATTGCTTTCAGAAAAATGAGATGAAGGACACCGATGGCATTACTGGTTTTGTGGTTCCGGACAAACTAGAACCCTTCAATGAATTTGCATCTACTCTAAGAGATCACATAGAACCACTGTTGCCAAAAGCTTGTGATTCGGTCATGTATAGTGTTATGGATTCTGGTAATATGGACGACAAGCATGTTATTGGGTTCTCCACAGAGAAGAATATTAAGGTTGCTGGACTTGAAAATGGATTTGACGACTCCTGCGTCACTATAATTCCATCAATGGGTTGCCAGAAGACTGATGAAATATTGCAACATGATGGTTCCTTGACTATGATTACCCGAGAAAGTGATTGTCTGGAGCAAAAGAGTTTCATTGGTTCTTTGGGGCAAAGCAGTTTAGAAGTTGCGAGAGATTGTAATCCCATCACTACGAACTCAAAAGTTGATGTTGCCAAAAATGCAATGCCACTAGAAAGAAACAGCAATTTGAAGGAAGGTCTCATAACAGGAAATTCAATTGCTGAGAAGTCAACATCTCAAGAATTATGTCATCCTTTTGATGTTAGAGATGATGGATTTTCCGAAATGATGAATACACAAAATATTTCTGTTGGAGATGCTACTTTCCTTAGCTCTAGCAGAGTCTGTTACAGTTCTGGGCAGATTGATTATGGGAGCAGAGACAATTTCAGAGTTGATTGTGTTCCTGAAGTCGATAGTGCTGATGCTGTGGCATCTACTTCTGGACTTAATAATGTTCAGAGAAGTAAATCAGTGCGGAAGACTCGTACAAAAAAATCTACTAAGAGGAGCAAGGGCGAAAGAAAAGCGCCACACTCTTGTAGGAATGTCCAAATTATATTTGAGGCTGCTAGAAGAAAGAGAACTTGTCTCTCCAAACCATCCCGCTCGACTATATGGGGATCGCTGAGCTGTATTACTCAATCTTCCTGGGTAAGTAGTGAGGTTCAGATTCAACAATTTCAGAATCAAGAATTAATGAAAGGGAGGAAGGGTAGACATAATGCCAAGCAGAATAAGAATGAAAGAAAACGAAGATCAAAAGGGTCAAAGCGAGAAAAGTGCTCTACTTCAACTGGTTGTCTCCGTTTGAAGGTTAAGTTGGGGAAACAGATGGATCAAAGTTTTTTTAATATAATGATTCCTGATGTAGATACATCACTGTCGGCTGCTACTAATAGTAGTTGTGGGACAGAGCCATATTGGAAAACGAGTTTTGATTTCCCTAAATTAACTAAGCATAATGAATGTGAAGTTCTTGAAGAGGCAACTGGTAAGCATGTGAATTCCAAAGAAAACCCTGATAATCTTCATTGTACTCTTTCTAGCATTCAACTAGAAAGTAATGTTTCTATTGATTCTATTATCATGCCGAAGACATCTTTAGATCAAGCAGATGAGTCTATTGGCATCTCCTCCATGTTTGTTGAATCCATGGATGGTGTGAGCTATGCCCGGCCATTGCATTCTGGTGCAAATGATCTGAGTTGCTCCTCTATAAGTAAGCTATCTATAGAACCATTTTCTTTGTCAAAAGCAACTGTATCTGTACAAGATGATGTGAAAATAGAAGCGAGCATTGCAGCGAAAGCATTAAGTGAGAATGATTATCAGTGTAAATTGTTTGGACCAACAAATTTGAAGGATCCGCTTCCTTCTAACTCTACAAGCCTTAAACTTTCAGAAAGTTCAAAATCTGGAAAAGCAAGCAAGGGAAAGTCCAAGACCTCTGACTCAGCAAAAAGGAGTGGAAATGCTCCAAGACAGAGAGATAATCAGCAGAAGTCCGTAAATAAGAATAAGCTCAAGAAAGTTTGTGATTATGCTGAGTCTACTGGAGTAACTTATCCAGAATCAGGAAATTTTATGGTTAACAGTATCAAAAAGACAAGCAGCAGTGATAATTTAGCGGTCAGAGAAGTATCAACCTTGAACATTGTTAATGATGTTTTGAATGAGAAGTATTCACCCGCCAAAAATGCATGGGTTCTCTGCGATGATTGTCAGAAATGGCGTCGAATACCAGCTGGCCTTGTAGATTCCATTGGACAAGAAAGTTGTACTTGGACCTGCAAGGACAACACTGATAAATCATTTGCTGATTGTTCAATCCCTCAAGAAAAATCAAATGTAGAAATCAATGCTGAGCTGGAAATATCAGAGGCCTCTGGTGATGACGAAGCTTCACGTGCCCACCGAACTTATAGACTATCGGAAAATCAGCGGTCAAAAGTTTTACAAGAGCGTGGATATACAAGAATCAAAAGCAATCATTATCTGCACCGAACTCGTAAATCCCAGACTATCGATGAGATAATGATTTGCCATTGCAAAGCACCTTATAATGGCAAGGTTGGCTGTGGAGATGAATGCTTGAATCGCATGCTTAATATTGAATGTAACCGAGGCACGTGCCCCTGTGGTGATCTATGTTCTAATCTACAGTTCCAAAAACGCAACTACGCTAAGTTAGGACGTTTAAAATGTGGGAAAAAGGGTTTTGGATTGCAGCTGCTCGAGGATATATCCCAAGGACAATTCCTCATTGAATATGTCGGAGAGGTGCTTGACATGCCTGCTTATGAGGCTAGACAGAAAGAATATGCTATGTATGGCCATCGACATTTCTACTTCATGACCTTGAATTGCAATGAGGTAATAGATGCGTCTGCTAAAGGAAATTTGGGTCGTTTCATTAATCATAGTTGTGAACCTAATTGTCGCACGGAAAAGTGGATGGTGAACGGAGAAATTTGTATTGGACTGTTCGCTTTAAGGGATATTAAGAAGGGTGAAGAGGTGACTTTTGACTACAATTATGTGAGGGTTTTTGGGGCAGCTGCTAAAAAATGTTACTGTGGTTCTCGTCACTGTCGTGGCTCTATAGGTGGGGATCCACTTAATTCTGGAGTTATTGTTCAGAGTGATTCAGATGAAGATTATTTGGAACCTGTGATGCTTCTTGAAGATGGTAAAGCCAATGATGGTTTGTCTACTCGAGCAAGTTCCTTCGATTATACTGAAACTCTTACTGTAGAGAGTATATCAAATACTAAAGATGAAGTGGATACATTTAGATCTTCTGTTGAGCACTTAGACATTACAAGAGAACAAGATGAACCATTAAATGACTCTGACTTTACTGCTCCTCAATTACAAAGCTCACTTGTATATGAGAAACTAATGGTAAAAGTACCTTCTGCAAGTCAAGTGCTTGAAAGTTCTCAGCAAACAGATATAACCAGTAAAACCACTTCGACTGCTCATCTAGACATCATTGTTCAGAGTCCATCTCACAAAAATTCTTGCATTGCTGAAGATACCGAGCCTTCTTGTCTAAATTCAATGAACAATAAGTCATTGTCTGATGGTTGTGATTCTAATAAGAAGTTTGATGCAGTTGAACACAAGCGGGTGTCTTCAAAGCGACGCCCTCTTGTGAAGACTTCACGTAAATCTGGCTTTGTTAAGAAAGGAAATGTGACTAATGATCCTTTACATTCCAACAAAGTACCTGTATTGGTCAACAAACTGCTATCTGTGAAGCCAAAGAAAATAATGGAAGCTTCAGGTCGCTTCGAAGCAGTTGAGGAGAAACTTAATGAGTTGCTGGACACTTGTGGGGGGATAAGCAAAAGAAAGGACGCTGCAAAGGGCTACTTGAAACTACTGCTTCTCACTGCAGCCTCAGGTGATAGAGTTAGTGGCGAAGCTATTCAAAGCAATAGAGACCTCTCAATGATCCTTGATGCTCTTTTAAAGACAAAGTCGCGAGTGGTACTGACTGATATCATTAATAAAAACGGTCTGCAGATGTTGCACAACATGATGAAACAATATAGGTGTGACTTCAAAAAGATTCCTATCCTGCGAAAGCTTCTTAAGGTGTTAGAGTATTTGGCAGTGAGAGAGATAGTTTCTTCTGAGCATATTAATGCTGGTCCTCGCTGTCTAGGAATGGAAAGTTTTGCGGAGTCGATGCTGTCACTGACGGAGCATGCTGACAAGCAGGTCCATCATATTGCAAGAAAGTTTCGGGACAGATGGATTCATAGGCCTCTCAGAAAATTTATCAAGGAGAGGGATGATGGGAGGATGGAACAACACAAAGGTCCAACAGAAACCATTGATGGTGTCAAGCATTTAGTGGTTGCTGATGCTGCTATACATATTAATGTCGGACCAGGCTGTTCTATATCTCCTATGAATGATCATATAGATACCTCCAAACCTCGTAAACGTAAGAGTCGATGGGATCAGCCAACAGCTTCTATAGCAGAGTCAAGAGCTCTTCAGCCCATGGAACAGAAATTAGAATCCAGTCTATCGAATGGGGTAGGTGACTTAATAGTTGTTTGTGGAGACAAAGTTAACAGCTGTGTGGAAAGTAATTCTCTTGTCCACAACTTCTGTCAACACCACAAGACCAAGTCAGAAGATGGAGATCTAAACAACACAGATGATGTTCCTCCCGGATTTTCATCTCCACTTTACTCTATAGAATCTTCAAATGCTTCGCCTGCTGCTGTTGATCTACCTCAATCAATTAATGGCCTTTCAAAATGTTTTTCTACTGTAGCTGGGCATCTTCAAGAGAAATTTATTTCTCGTTTGCCTGTTTCCTATGGAGTTCCATTGTCTATTGTGCAACAATTTGGGACATCGCAGGCTGAAAATCTGGAAAATTGGATTATTGCTCCAGGAATGCCTTTTCATCCTTTCCCCCCTCTGCCACCGTCTAACCAGGAAAAGAAAACATCTCCTCCTTCTCATGCTCCAATTAAGAAACGGCCAGAGGAAAAACAGTGGGATAACTGTGGTCCTCACAGTAGTTATGAAGGTGAAAGTTCTCATGGCTCAGTAGTTTCTAACCAACCATTTTTGGATGGTCCACCTGGAAGCAATCAACACCCAACTAAACGAGCCAGGGGATCGTCCTGCGATCTAGGAAAAAGGCACTTCAGACAGCAAAAGTGGGATAATGCGTGCGATGGCCCTCCTTGGTTACAGAGAAGGAACGACTGGGGATATCTAGAGAATATTCAGGAGGGCCAATATCCTCCCCCGGCCTAG 5697 40.53 MGSYDCTTVVGEPMCGPTIVDFSEKLVSEHQPCPSSGSVYCLLEANSNEVDNCPILSRDDILPTDDWLVTQCENADESILSNELYSKCGISDVSLDENRVETDACNMKSGKLMQCNKYGLLNTTDGFKLTSEIIASDTSSGFFIQQNEENANNSVGGSPETIVKEVMEEKKFDLIEIEADTGGLLSPSRGSEISLNSMVPLINYCFQKNEMKDTDGITGFVVPDKLEPFNEFASTLRDHIEPLLPKACDSVMYSVMDSGNMDDKHVIGFSTEKNIKVAGLENGFDDSCVTIIPSMGCQKTDEILQHDGSLTMITRESDCLEQKSFIGSLGQSSLEVARDCNPITTNSKVDVAKNAMPLERNSNLKEGLITGNSIAEKSTSQELCHPFDVRDDGFSEMMNTQNISVGDATFLSSSRVCYSSGQIDYGSRDNFRVDCVPEVDSADAVASTSGLNNVQRSKSVRKTRTKKSTKRSKGERKAPHSCRNVQIIFEAARRKRTCLSKPSRSTIWGSLSCITQSSWVSSEVQIQQFQNQELMKGRKGRHNAKQNKNERKRRSKGSKREKCSTSTGCLRLKVKLGKQMDQSFFNIMIPDVDTSLSAATNSSCGTEPYWKTSFDFPKLTKHNECEVLEEATGKHVNSKENPDNLHCTLSSIQLESNVSIDSIIMPKTSLDQADESIGISSMFVESMDGVSYARPLHSGANDLSCSSISKLSIEPFSLSKATVSVQDDVKIEASIAAKALSENDYQCKLFGPTNLKDPLPSNSTSLKLSESSKSGKASKGKSKTSDSAKRSGNAPRQRDNQQKSVNKNKLKKVCDYAESTGVTYPESGNFMVNSIKKTSSSDNLAVREVSTLNIVNDVLNEKYSPAKNAWVLCDDCQKWRRIPAGLVDSIGQESCTWTCKDNTDKSFADCSIPQEKSNVEINAELEISEASGDDEASRAHRTYRLSENQRSKVLQERGYTRIKSNHYLHRTRKSQTIDEIMICHCKAPYNGKVGCGDECLNRMLNIECNRGTCPCGDLCSNLQFQKRNYAKLGRLKCGKKGFGLQLLEDISQGQFLIEYVGEVLDMPAYEARQKEYAMYGHRHFYFMTLNCNEVIDASAKGNLGRFINHSCEPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSRHCRGSIGGDPLNSGVIVQSDSDEDYLEPVMLLEDGKANDGLSTRASSFDYTETLTVESISNTKDEVDTFRSSVEHLDITREQDEPLNDSDFTAPQLQSSLVYEKLMVKVPSASQVLESSQQTDITSKTTSTAHLDIIVQSPSHKNSCIAEDTEPSCLNSMNNKSLSDGCDSNKKFDAVEHKRVSSKRRPLVKTSRKSGFVKKGNVTNDPLHSNKVPVLVNKLLSVKPKKIMEASGRFEAVEEKLNELLDTCGGISKRKDAAKGYLKLLLLTAASGDRVSGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLQMLHNMMKQYRCDFKKIPILRKLLKVLEYLAVREIVSSEHINAGPRCLGMESFAESMLSLTEHADKQVHHIARKFRDRWIHRPLRKFIKERDDGRMEQHKGPTETIDGVKHLVVADAAIHINVGPGCSISPMNDHIDTSKPRKRKSRWDQPTASIAESRALQPMEQKLESSLSNGVGDLIVVCGDKVNSCVESNSLVHNFCQHHKTKSEDGDLNNTDDVPPGFSSPLYSIESSNASPAAVDLPQSINGLSKCFSTVAGHLQEKFISRLPVSYGVPLSIVQQFGTSQAENLENWIIAPGMPFHPFPPLPPSNQEKKTSPPSHAPIKKRPEEKQWDNCGPHSSYEGESSHGSVVSNQPFLDGPPGSNQHPTKRARGSSCDLGKRHFRQQKWDNACDGPPWLQRRNDWGYLENIQEGQYPPPA 1898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76962592 76981819 + Bma002913.1 Bma01g02090 76607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1852 1867 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 541 559 - -
Bma01g02090 1898 PANTHER SET DOMAIN PROTEINS 453 1851 - -
Bma01g02090 1898 ProSiteProfiles Post-SET domain profile. 1155 1171 IPR003616 -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1608 1632 - -
Bma01g02090 1898 SUPERFAMILY SET domain 957 1168 IPR046341 -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 759 805 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 459 477 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 787 801 - -
Bma01g02090 1898 Gene3D SET domain 926 1185 IPR046341 -
Bma01g02090 1898 ProSiteProfiles AWS domain profile. 978 1028 IPR006560 GO:0005634|GO:0018024
Bma01g02090 1898 CDD SET_SETD2 1029 1171 IPR044437 GO:0010452|GO:0046975
Bma01g02090 1898 Gene3D - 867 925 - -
Bma01g02090 1898 SMART shorttest3 978 1029 IPR006560 GO:0005634|GO:0018024
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1817 1850 - -
Bma01g02090 1898 SMART set_7 1030 1153 IPR001214 GO:0005515
Bma01g02090 1898 SMART PostSET_3 1155 1171 IPR003616 -
Bma01g02090 1898 Pfam SET domain 1041 1147 IPR001214 GO:0005515
Bma01g02090 1898 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 453 1851 - -
Bma01g02090 1898 Pfam AWS domain 993 1027 IPR006560 GO:0005634|GO:0018024
Bma01g02090 1898 MobiDBLite consensus disorder prediction 534 563 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1797 1814 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 759 773 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1779 1874 - -
Bma01g02090 1898 Pfam CW-type Zinc Finger 870 916 IPR011124 GO:0008270
Bma01g02090 1898 ProSiteProfiles SET domain profile. 1030 1147 IPR001214 GO:0005515
Bma01g02090 1898 ProSiteProfiles Zinc finger CW-type profile. 864 918 IPR011124 GO:0008270
Bma01g02090 1898 MobiDBLite consensus disorder prediction 1614 1628 - -
Bma01g02090 1898 Coils Coil 1394 1414 - -
Bma01g02090 1898 MobiDBLite consensus disorder prediction 446 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02090 - - - qsu:111999241 1278.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02090 Bma-Chr1:76962592 Bma03g01472 Bma-Chr3:43567537 2.54E-28 dispersed
Bma01g02090 Bma-Chr1:76962592 Bma12g00666 Bma-Chr12:27879320 6.00E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56765 PF00856 SET 1.60E-17 No_clan Bma TR