Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02091 ATGCAGCTTTATCATCATCCATTCTCTTTGGACAGCCAAAAAGTGAGACTTGCTTTAGAAGAAAAAGGCATTGATTACACGTCTTACCATGTCAATCCTATTACAGGTAAGAACTTGGATTCCACATTCTTCAGGATGAACCCAACAGCCAAGCTCCCTGTTTTCCAGAATGGTGATCACATCATGTACGACACTATCGAAATTATCCAGTACATTGAAAGAATTTCTATTGTCACTTCGGGTAGCATAGACGAAAAGGCAACGAGCAGTAGCCAAGCCGTCGTCCAATGGATGCAGAAAATACAAGATTGGAATCCTAAATATTTCACCCTTAACTACATACCCGAAAAGTATCGACTCATGGTCACAAAATTCTTGAGGCGCGTAACGATTGCTCGACTGGCTGAATTGCCCGATCTTGCACCTGCTTACCACCGCAAACTAAGACAAGCCTACGAGACGGAAGACAAGTTGAAAAATTCAGATGCTGTGAAACAAAACATACAACACCTAAATCAACTTCTGGACGAAGTCGAAGCGAAGTTGTCGGAAAGTGCATATCTAGGCGGAGAAGAGTTTTCTATGGCAGATGTAATGCTCATTCCGGTCCTATCTCGGATAGTGATATTGAAGTTGGAAGAGTACATAAAAATCAGGCCAAATATTGCAGAGTATTGGTTGGTGGTGCAGGAGAGGCCAAGCTACAAGAAGGTGATCGGAAGGTACTTCAAGGGGTGGAGAAAGCACAAGACTCTAGTCAAAACCTGGTTTTTTGTACATTTCAGAAGCTTGCTGAAGAGGTTGTATGATGGACCAAATCTAGGAGTTGATGACATGAACCAGAAAGGCCAGAGACAAAAGAATTGA 867 42.45 MQLYHHPFSLDSQKVRLALEEKGIDYTSYHVNPITGKNLDSTFFRMNPTAKLPVFQNGDHIMYDTIEIIQYIERISIVTSGSIDEKATSSSQAVVQWMQKIQDWNPKYFTLNYIPEKYRLMVTKFLRRVTIARLAELPDLAPAYHRKLRQAYETEDKLKNSDAVKQNIQHLNQLLDEVEAKLSESAYLGGEEFSMADVMLIPVLSRIVILKLEEYIKIRPNIAEYWLVVQERPSYKKVIGRYFKGWRKHKTLVKTWFFVHFRSLLKRLYDGPNLGVDDMNQKGQRQKN 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 76981972 76984102 - Bma030282 Bma01g02091 76608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02091 288 CDD GST_N_family 1 73 - -
Bma01g02091 288 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 120 252 IPR010987 -
Bma01g02091 288 SUPERFAMILY Thioredoxin-like 1 74 IPR036249 -
Bma01g02091 288 Gene3D - 138 239 - -
Bma01g02091 288 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 80 IPR004045 -
Bma01g02091 288 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Bma01g02091 288 SFLD Main (cytGST) 1 232 - -
Bma01g02091 288 SFLD Glutathione Transferase (cytosolic) 1 232 IPR040079 -
Bma01g02091 288 Gene3D Glutaredoxin 1 75 - -
Bma01g02091 288 SUPERFAMILY GST C-terminal domain-like 139 242 IPR036282 -
Bma01g02091 288 Coils Coil 161 181 - -
Bma01g02091 288 PANTHER GLUTATHIONE S-TRANSFERASE TCHQD 1 267 IPR044617 GO:0004364
Bma01g02091 288 Pfam Glutathione S-transferase, C-terminal domain 163 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02091 K22077 GDAP1; ganglioside-induced differentiation-associated protein 1 - pvy:116140169 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02091 Bma-Chr1:76981972 Bma05g00188 Bma-Chr5:5233179 5.82E-13 dispersed
Bma01g02091 Bma-Chr1:76981972 Bma13g00049 Bma-Chr13:650788 1.22E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g210 Blo01g01309 . Bda01g00677 . Bpe02g00628 . . Bma01g02091 . . Cma01g01364 Cma09g00767 . . . Cpe06g00604 . . . . . . . . . . . . . . . Cone4ag1434 Cone7ag1501 . . . Csa04g01774 . . . . . . . . . . . Cmo01g01417 Cmo09g00759 . . . Car09g00677 . Cpe02g00572 Bhi09g02716 . . . . . . Cla11g01560 Cam11g1625 Cec11g1651 . Clacu11g1781 Cmu11g1597 . . . Chy07g00602 Cme07g00806
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g01002 . 1 205 Glutathione S-transferase Gene Family AT2G02930 50.2 1.1e-52 203.4
Bma13g00392 . 1 220 Glutathione S-transferase Gene Family AT2G47730 51.1 1.2e-56 216.9
Bma10g01002 . 1 208 Glutathione S-transferase Gene Family AT2G47730 51.9 1.6e-56 216.5
Bma14g01123 . 1 212 Glutathione S-transferase Gene Family AT3G03190 59.4 5.7e-73 270.8
Bma14g01123 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.8 2.0e-73 272.3
Bma01g01846 . 3 216 Glutathione S-transferase Gene Family AT3G09270 55.3 4.0e-69 258.1
Bma01g01843 . 3 189 Glutathione S-transferase Gene Family AT3G09270 57.4 6.4e-59 224.2
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78380 63.7 4.6e-86 314.3
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G78380 65.1 1.8e-82 302.4
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78380 63.6 2.0e-81 298.9
Bma13g00909 . 1 232 Glutathione S-transferase Gene Family AT1G78370 58.6 9.2e-79 290.0
Bma13g00910 . 1 212 Glutathione S-transferase Gene Family AT1G78370 61.3 3.9e-77 284.6
Bma10g00468 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.2 1.9e-76 282.3
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78340 59.0 9.9e-81 296.6
Bma13g00910 . 1 211 Glutathione S-transferase Gene Family AT1G78340 63.0 2.9e-80 295.0
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78340 60.7 4.6e-78 287.7
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78320 51.4 1.0e-57 219.9
Bma13g00910 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 2.3e-57 218.8
Bma13g00909 . 1 237 Glutathione S-transferase Gene Family AT1G17180 60.8 4.6e-86 314.3
Bma10g00468 . 1 217 Glutathione S-transferase Gene Family AT1G17180 63.5 4.3e-84 307.8
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.6 8.2e-83 303.5
Bma13g00909 . 3 235 Glutathione S-transferase Gene Family AT1G17190 54.5 2.4e-74 275.4
Bma13g00910 . 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 3.2e-71 265.0
Bma10g00468 . 3 215 Glutathione S-transferase Gene Family AT1G17190 55.8 4.2e-71 264.6
Bma13g00910 . 3 215 Glutathione S-transferase Gene Family AT3G43800 51.6 2.4e-61 232.3
Bma13g00909 . 4 237 Glutathione S-transferase Gene Family AT1G53680 54.0 1.8e-69 259.2
Bma13g00910 . 4 216 Glutathione S-transferase Gene Family AT1G53680 57.8 6.8e-69 257.3
Bma10g00468 . 4 217 Glutathione S-transferase Gene Family AT1G53680 53.2 3.7e-67 251.5
Bma14g01714 . 53 220 Glutathione S-transferase Gene Family AT2G02390 58.3 6.7e-57 217.2
Bma06g01222 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.3 4.4e-48 188.0
Bma14g01714 . 11 223 Glutathione S-transferase Gene Family AT2G02380 61.0 5.9e-73 270.8
Bma06g01222 . 15 223 Glutathione S-transferase Gene Family AT2G02380 54.1 1.0e-61 233.4
Bma05g00815 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 4.9e-97 350.9
Bma05g00815 . 1 250 Glutathione S-transferase Gene Family AT5G41240 66.8 5.5e-94 342.0
Bma10g00017 . 10 226 Glutathione S-transferase Gene Family AT5G02780 64.8 2.9e-78 288.5
Bma10g00017 . 8 231 Glutathione S-transferase Gene Family AT3G55040 58.2 8.3e-75 277.3
Bma10g00017 . 7 227 Glutathione S-transferase Gene Family AT5G02790 66.2 7.9e-84 307.0
Bma03g00309 . 1 237 Glutathione S-transferase Gene Family AT1G19570 60.5 1.8e-79 292.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G19570 57.9 4.5e-70 261.2
Bma08g01128 . 1 241 Glutathione S-transferase Gene Family AT1G19570 51.7 4.2e-68 254.6
Bma03g00309 . 1 238 Glutathione S-transferase Gene Family AT1G75270 61.5 9.6e-81 296.6
Bma08g01128 . 1 209 Glutathione S-transferase Gene Family AT1G75270 63.8 7.4e-73 270.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G75270 57.4 9.0e-71 263.5
Bma01g01148 . 53 273 Glutathione S-transferase Gene Family AT5G16710 71.9 1.4e-97 352.8
Bma08g01128 . 3 211 Glutathione S-transferase Gene Family AT5G16710 52.6 3.9e-60 228.4
Bma01g02091 . 1 267 Glutathione S-transferase Gene Family AT1G77290 66.8 1.0e-100 363.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005962 2 5 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 1 2 0 1 1 1 1 1 1 1 1 2 1 35