Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02095 ATGGTGTCAAATGGATTCTATAAGGAAGCTGATGTAAAAACTGGCATTGCATCTAAACAATCGTTTGAAATATCCAATAAGTGTACTTTCACCGATAAGTGCTGGCGTGCCTTACTGAGTGTAGTAATTTCTCAAAAGTTTACATCTCTATGCAAGCTACTGTTTGAAAATTTCCAAGGAACCAAAGACCCATTGGATTTTGGCACTATAAACTCGAGAATGAAAAATGGTGGTTATGAAAATTCACCAATGCTCTTCTCCTCAGACATACAACAGGCAATATGGAGAAAGCTTGAAAGTGTTGGAACAGAAATGGTTTCACTTGCAGTCAGCCTTTCAGATCTGTCCAAAAGTGCCTACCATGAACAGGTGAGGACTTGCAGCATATCATTCGTTAAATTTCTCTTTGCAATACAGGTAAGTGTCTTGGAATGTCATTCTCATCCTAAAGCAGAACAGACAGAGGACTGTAATTTTTATCAATTGTCCTCTTGCCGACAATGTGGAGAGATGGCAGATGGGACAGACTCTTTAGTATGTGATTCATGTGAGGAAATGTACCACGTATCCTGCATCAAGCCAGCCGTGAGTGAGATTCCCCCAAAAAGTTGGTACTGTGCTAGATGCACTTCCTGTGGAATCAGATCACCACATGATAATTGTGCAGTGTGTGCAAGGCTGAATGTGCCTAAAACTATAACTAATGGTGTTGATGAAACGATGCCGCCAAATGGACTTCTGGACCATCACGTTGAAGAGAATTCAAACAGCAGTACAGATAATGAACTGTCCATGGATAGTAAAACTTCCCTCTGTAAGATTTGTGGAAATAAAGTGGAAAATGGTGACGAATTCAGAACTTGTAGTCATCCATTCTGTGCCGATAAATGTTACCATACAAGGTGCCTTACCAAAAAACAGTTAAGATCCTATGGTTCCTGTTGGTACTGCCCTTCATGTCTTTGTCGAGTGTGCTTTGTTGATCAAGATGATGACAAGATTGTCCTATGTGATGGCTGTGATCATGCATACCACATATACTGCTTGAAACCACCACGCACCTCAATTCCTAGAGGGAAGTGGTTTTGTAGAGAATGCGATGCAGGTATCCGGGCAATACGTCAGGCAAAAAAGGCACATGAGAGTGCTGAAATTGATAAGAAAAAGGGAAATAATGTGCGTATTGCTTATGTTAATCTTAAAGGGAAGCTGAAGGGTGGTGAATCAGATAAAGGTGGAGGAGGAATGGACATGCTTCTAACGGCAGCAAAGACCCTTAACTACGAAGAAAATTTAGCTGCAATTCATATGAAGAGCTGA 1320 40.91 MVSNGFYKEADVKTGIASKQSFEISNKCTFTDKCWRALLSVVISQKFTSLCKLLFENFQGTKDPLDFGTINSRMKNGGYENSPMLFSSDIQQAIWRKLESVGTEMVSLAVSLSDLSKSAYHEQVRTCSISFVKFLFAIQVSVLECHSHPKAEQTEDCNFYQLSSCRQCGEMADGTDSLVCDSCEEMYHVSCIKPAVSEIPPKSWYCARCTSCGIRSPHDNCAVCARLNVPKTITNGVDETMPPNGLLDHHVEENSNSSTDNELSMDSKTSLCKICGNKVENGDEFRTCSHPFCADKCYHTRCLTKKQLRSYGSCWYCPSCLCRVCFVDQDDDKIVLCDGCDHAYHIYCLKPPRTSIPRGKWFCRECDAGIRAIRQAKKAHESAEIDKKKGNNVRIAYVNLKGKLKGGESDKGGGGMDMLLTAAKTLNYEENLAAIHMKS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77017734 77019788 + Bma002917.1 Bma01g02095 76612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02095 439 ProSiteProfiles Zinc finger PHD-type profile. 162 212 IPR019787 -
Bma01g02095 439 PANTHER D4, ISOFORM A 32 430 - -
Bma01g02095 439 ProSiteProfiles Zinc finger PHD-type profile. 319 369 IPR019787 -
Bma01g02095 439 Pfam PHD-finger 165 212 IPR019787 -
Bma01g02095 439 Pfam PHD-finger 322 367 IPR019787 -
Bma01g02095 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 372 IPR013083 -
Bma01g02095 439 ProSitePatterns Zinc finger PHD-type signature. 165 209 IPR019786 -
Bma01g02095 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 213 IPR013083 -
Bma01g02095 439 PANTHER HISTONE ACETYLTRANSFERASE 32 430 - -
Bma01g02095 439 SUPERFAMILY FYVE/PHD zinc finger 321 372 IPR011011 -
Bma01g02095 439 SMART PHD_3 324 367 IPR001965 -
Bma01g02095 439 SMART PHD_3 271 321 IPR001965 -
Bma01g02095 439 SMART PHD_3 164 210 IPR001965 -
Bma01g02095 439 SUPERFAMILY FYVE/PHD zinc finger 161 213 IPR011011 -
Bma01g02095 439 SUPERFAMILY FYVE/PHD zinc finger 261 321 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02095 - - - jre:109019080 498.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00999 Bma-Chr1:10097464 Bma01g02095 Bma-Chr1:77017734 2.50E-11 dispersed
Bma01g01004 Bma-Chr1:10191446 Bma01g02095 Bma-Chr1:77017734 4.72E-11 dispersed
Bma01g02095 Bma-Chr1:77017734 Bma08g00393 Bma-Chr8:9578476 7.88E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g202 Blo01g01312 . Bda01g00681 . Bpe02g00624 . . Bma01g02095 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1438 . . Cone20ag0418 . . . . . . . . . . . . . . . . . . . . Cpe02g00868 Bhi09g01871 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007161 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56767 PF00628 PHD 7.20E-13 CL0390 Bma TR