Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02098 ATGGAGATGGTGAGGAACATGCCCGAGTCCTGTTACGAGCTTTCGTTGAAAGACCTGGTGGAGCACCCGATGGTTCAGGCGCGACAGGAAGAAACCACAGCGGAGGAAAGGGATAGTTTAAGCTCTGAATTGTTGTACAGAAGAGAACTCAGCAAGAAGAAGAACCAAAACAATGCGTTAATTCGTAGAGACAGGAGAATTGACAATGGAGGTTTTTACTTAAAAATGATGTTTCCATTATCTCTGGGATCAACCAGAAAGAAGACGAAGAAGAACGAATCGAGGTTGAATAACGAGGAAAAAATCGCGGGGAGGCCTTCAGTTTCGGATGGCTCTGCAAAAGGAGTCGACAAAGAGTGGTGGAAGAAGAGGGCTTCGGTTTCCTGCGACAGCGAGAGCGGTGGTTCTAGCTTAAACAGTGGGAGCGTGAGGAGCAGTGGGAGCAGCAGTACTGGCAGTAGCGGCAGTAGCAGAAGCATCCACAGAATCACATTAATTGCTTCGAGAACACTTGTGGAGGAAGCAAAGGAAAATCGAACCATGAACGCACAAAGTGGGCCCCGGTCGACTTTGAACCCCTTGAAAACGCGTATCAACGGTCAGATCATTTCCATCAGGAGCCACTTGGTAATTGTCAGTGGAAAAAAAAAAGAAAGGCCTTTAATTTGGTCTCACAAAGACATGACTAGTAACGCAGCAGCATGTGCTGAGAGGGCAACCAACGACATGTTAATTGGTCCGGATTGGGCTATTAACATTGAGCTATGTGATATTATTAACATGGAACCTGGGCAAGCAAAGGATGCCTTGAAGATACTTAAAAAGCGCCTGGCCATTAAAAATCCTAAAATACAGCTTCTTGCTCTTTTCGCATTGGAGACAATCAGCAAAAACTGTGGTGAAAATGTATTTCAATTGATCATTGAGCGCGATATTCTTCACGAAATGGTTAAAATAGTAAAGAAGAAGCCTGACTTTCATGTAAAGGAAAAGATATTGAGTTTGATTGATGCATGGCAAGAAGCTTTTGGGGGACCAAGGGGCAGATATCCTCAGTTTTATGCAGCCTACAATGAATTGAAGTTAGAGAGAATTTCACTTAGACAATATTCAAATCTTTTTCAATTAACTTCCCTAACCCTCTATTTTGCGGGAGTTGAATTTCCACCCCGAGAAGACAATGGAGTGCCGTTTTTCACTCCACCCCAAACCCAACCTATAATAGTTCACCATCCTGACCCGGCCTACGATGACGCCGCACTTGAGGCATCTCTTCAGTCTGATGCGTCTGGCCTTAGCTTGCCAGAAATTCAGACAGCGCAGGGACTGGCAGATGTGTTAATGGAAATGCTTGGTGCTTTGGATCCTAAGAAGCCAGAGAGTGTGAAGGAAGAAGTGATAGTTGACCTCGTAGAGCAGTGCCGGTCGTACCAAACACGCGTGATGCTACTCGTGAACGAGACTGCAGATGAGGAACTTCTGTGTCAGGGATTGGCGTTGAACGACAGTTTGCAGCGTGTTCTTGGTCGACACGATGACATTTTGAATAGAACCTCCGGTACAGGGGTAAGAGAAACTGAATCCTCAGTCTTGCCGATGTTGAATTTGAATCACGAAGATGATGATTCGGAAGATGAGTTTGCCCAGCTAGCTCATAGGCCATCTAGAGAGAGTTTGGAAGACAAGAGCAGGAGATCAGCCAATGGCAGCTCTGATCAAGTTCGAATCAACCCATTACTTCCTCCTCCCCCCTCTTCAAAGACTCCCGTTTCTTCTCACGACACTCCCATGGTAGACTATTTAAGCGGGGACCATTATAAGTCGAAAGAATCTTCTGAAACCTCAAGACCCGTATCTGTCCTTCCTCTCCGCTCTGACTCGACTTCAACTGAACCATTGGATTCAACTCTATCTTCTTCTCCGCCTCCTTATTCTGGTCCCAAAACCCCCCTCATATCACCCTTCACTGGCCTTCCCGTTTTTGATGAGCCTCCTCTGAGGGACAGTTCCCCAGACCCACTTCCTCCGGCTCCATGGGGCGGTCAGTCTGGTCGTGACACTCCGGTTTCACTCCCTCCTCCACCATCGAGATATAATCAGAGACAACAGTTTTTCGAGCAAAAACAAGGTCATGGGGGAAGCTCATCTCATTCAAGCGGTGAATTTGGTTCTTCCAATGACAGCTTAGTCGGACCAACTCAAAGCCTCTCTCTCAATCCTACACCGACCAAACAGGAAAAACCAGAAGATGCCCTCTTCAAAGATCTCGTCGATTTTGCAAAAGCCAAGTCGTCTTCGCCCTCGAAAATCAACAGATCTTATTAG 2325 46.37 MEMVRNMPESCYELSLKDLVEHPMVQARQEETTAEERDSLSSELLYRRELSKKKNQNNALIRRDRRIDNGGFYLKMMFPLSLGSTRKKTKKNESRLNNEEKIAGRPSVSDGSAKGVDKEWWKKRASVSCDSESGGSSLNSGSVRSSGSSSTGSSGSSRSIHRITLIASRTLVEEAKENRTMNAQSGPRSTLNPLKTRINGQIISIRSHLVIVSGKKKERPLIWSHKDMTSNAAACAERATNDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLAIKNPKIQLLALFALETISKNCGENVFQLIIERDILHEMVKIVKKKPDFHVKEKILSLIDAWQEAFGGPRGRYPQFYAAYNELKLERISLRQYSNLFQLTSLTLYFAGVEFPPREDNGVPFFTPPQTQPIIVHHPDPAYDDAALEASLQSDASGLSLPEIQTAQGLADVLMEMLGALDPKKPESVKEEVIVDLVEQCRSYQTRVMLLVNETADEELLCQGLALNDSLQRVLGRHDDILNRTSGTGVRETESSVLPMLNLNHEDDDSEDEFAQLAHRPSRESLEDKSRRSANGSSDQVRINPLLPPPPSSKTPVSSHDTPMVDYLSGDHYKSKESSETSRPVSVLPLRSDSTSTEPLDSTLSSSPPPYSGPKTPLISPFTGLPVFDEPPLRDSSPDPLPPAPWGGQSGRDTPVSLPPPPSRYNQRQQFFEQKQGHGGSSSHSSGEFGSSNDSLVGPTQSLSLNPTPTKQEKPEDALFKDLVDFAKAKSSSPSKINRSY 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77027712 77037287 - Bma002920.1 Bma01g02098 76615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02098 774 ProSiteProfiles GAT domain profile. 428 516 IPR004152 GO:0035091|GO:0043130
Bma01g02098 774 MobiDBLite consensus disorder prediction 84 115 - -
Bma01g02098 774 MobiDBLite consensus disorder prediction 128 159 - -
Bma01g02098 774 Pfam GAT domain 443 515 IPR004152 GO:0035091|GO:0043130
Bma01g02098 774 Gene3D - 425 523 IPR038425 -
Bma01g02098 774 MobiDBLite consensus disorder prediction 613 642 - -
Bma01g02098 774 MobiDBLite consensus disorder prediction 551 751 - -
Bma01g02098 774 Pfam VHS domain 236 361 IPR002014 GO:0035091|GO:0043130
Bma01g02098 774 PANTHER TOM1-LIKE PROTEIN 228 363 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bma01g02098 774 MobiDBLite consensus disorder prediction 696 744 - -
Bma01g02098 774 SUPERFAMILY ENTH/VHS domain 235 361 IPR008942 -
Bma01g02098 774 SMART VHS_2 232 364 IPR002014 GO:0035091|GO:0043130
Bma01g02098 774 MobiDBLite consensus disorder prediction 129 159 - -
Bma01g02098 774 CDD VHS 237 361 - -
Bma01g02098 774 PANTHER TOM1-LIKE PROTEIN 4 381 773 - -
Bma01g02098 774 PANTHER TOM1-LIKE PROTEIN 4 228 363 - -
Bma01g02098 774 ProSiteProfiles VHS domain profile. 239 368 IPR002014 GO:0035091|GO:0043130
Bma01g02098 774 MobiDBLite consensus disorder prediction 551 568 - -
Bma01g02098 774 CDD GAT_GGA_like_plant 436 514 - -
Bma01g02098 774 SUPERFAMILY GAT-like domain 393 515 - -
Bma01g02098 774 Gene3D - 232 363 IPR008942 -
Bma01g02098 774 MobiDBLite consensus disorder prediction 86 100 - -
Bma01g02098 774 PANTHER TOM1-LIKE PROTEIN 381 773 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02098 - - - rcu:8270940 632.869
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02098 Bma04g00022 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02098 Bma-Chr1:77027712 Bma04g00401 Bma-Chr4:3274224 1.94E-106 dispersed
Bma01g01338 Bma-Chr1:18629867 Bma01g02098 Bma-Chr1:77027712 2.93E-100 wgd
Bma01g02098 Bma-Chr1:77027712 Bma04g00022 Bma-Chr4:275443 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76