Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02099 ATGCAGTTTGACCTGCCTTTTTTGGCTCGACAATTACAGTTCTGTAATACCCAAATTTCGATTCATCAAGGGAGACAGATTCATGTTGTCTTTCTCAAAATGGGTCTTCTTTGCTCTCCCCTTTCTTTGGGTAATCGTCTTATTCAAATGTATACCAGGTGTGACAGCATGGTTGATGCACATCGGCTGTTCGAGGAAATGCCGCTTAGAAACTGTTTCTCTTGGAACACCATGATTGAAGGCTATCTTAAATTCGGGGACGAAAAGAAGTCTCTCGAGCTGTTTAAATCTATGCCCAGTAAGAATGACTTTTCGTGGAATGTGATTGTTTCTGGACTTTTGAAATTTAGACGGCTTGAGACTGCTCGGAGCTTGTTCGATGATATGCCTAGGAAGAATATGGTGGTTTGGAATTCAATGATTCATGGCTATGCTCGATATGGATGTCCGACCGAAGCTCTGAGGCTTTTCAAGGAGTTGAATTCAGAACCTTTAGAAATATCAATCATGGATAATTTTGTCTTGGCCACTGTGTTTAGGGCTTGTACAGATCTTCTGGCTCTTGATCAGGGGAAACAAATTCATGCCCGTTTTTTAGTTGACAAAGTCGAATTTGACTCAGTTTTGGCTAGCTCGTTGATCAATTTTTATGGCAAGTGTGGAGACTTGGATAGTGCAAATCATGTTTTGAATATGATTAAAGAACCAGATGACTTCTCTCTATCAGCACTGGTTTCTGGGTATGTAAACTGCGGTAGATTTTACGACGCCAAAAGGATATTTGACAGAAAACACGATCCGGGTGTTATATTGTGGAACACAATGATTTCAGGGTATGTTTCCAATGGCGAAGAAATGGAAGCTTTATCTCTTTTTAACAATATGAGAAGTAAAGCAGTTGAGCAAGATTCATCGACATTAGCAAGTATAATAAGTGCTGGAAACAGCTTAGGTTCTATTTCACACATTAAACAGATGCACATTCTCGCTCTTAAGGTCGGGTTCGTCGATGATGTTGTGGTTGCAAGTTCTCTGATCGATGCGTATTCCAAATGTGGAAGACCGGATGAGGCTTGTAAATTATTTAAGGAGCTCAAATATTATGATACAATCTTGCTAAATTCTATGATCACAATCTATTCCAACAGCGGAAAAATTAAAGAGGCTAAAATGATATTCAAGACGATGTCAGACAAAAGCTTGGTGTCGTGGAATTCAATGATAGTGGCTTTAAGTCAAAATGGTTGTCCGATGGAAGCCATAGATCTTCTCTGCAAAATGAACAAGCTCGGGTTGGAAATGGACAAATTTAACATGGCCAGTGTGATCAGCTCCTGTGGTTGCATCTCGTTACTCGAACTCGGCGAACAGATTTTCGCTAAGGCTATAGTTTCTGGACTGGAATCCGATATAATCATTTCTATCTCTCTCGTTGATTTCTATAGTAAATGCGGTCTCTTTGAACAAGGATGGAAAATTTTTGATGGAATGGTAAAAGTCGATGAAATATCTTGGAACTCGATGATAATTGGCTATGCGACAAATGGCCATGGAATGGAGGCACTGAATCTTTTTAATGAGATGAGGAAAGCTAATGTGATACCCTCTGGAATTACATTTACTGGCGTTCTCTCTGCTTGCAATCATTGTGGACTCGTCGAAGAAGGACGGAAATGGTTTGAAACGATGAAAAGGGACTATAATATCAATCCGAGTATCGAACACTACTCTTGTATGGTCGACCTTTTTGCTCGAGCTGGGTGTCTCCAAGAAGCTGTAAATGTGATTGAAAATATGTCCTTTGAGGCAGATGTAAGTATGTGGTCGGCTGTCCTGAGAGCATGTGTTGAACATGGAAATAGAACTGTTGGGAAGATGGTTGCAGAGAAAATTATTGAATTTGAGCCTCACAACTCTGGTGCTCATGTTCAACTGGCTAGCATATTGGCCGCCATTGGAGACTGGGAAGGATCGGCTAAGATTTGGAAAGCTATGAGAGAGAAAAAGATTCAAAAGAATCCTGGTTACAGTTGGGCTGATACTGGAACCATTATTGCAGAATCTGTCCCTGCGTTCACTGTGAATTCTGTTTAA 2094 40.45 MQFDLPFLARQLQFCNTQISIHQGRQIHVVFLKMGLLCSPLSLGNRLIQMYTRCDSMVDAHRLFEEMPLRNCFSWNTMIEGYLKFGDEKKSLELFKSMPSKNDFSWNVIVSGLLKFRRLETARSLFDDMPRKNMVVWNSMIHGYARYGCPTEALRLFKELNSEPLEISIMDNFVLATVFRACTDLLALDQGKQIHARFLVDKVEFDSVLASSLINFYGKCGDLDSANHVLNMIKEPDDFSLSALVSGYVNCGRFYDAKRIFDRKHDPGVILWNTMISGYVSNGEEMEALSLFNNMRSKAVEQDSSTLASIISAGNSLGSISHIKQMHILALKVGFVDDVVVASSLIDAYSKCGRPDEACKLFKELKYYDTILLNSMITIYSNSGKIKEAKMIFKTMSDKSLVSWNSMIVALSQNGCPMEAIDLLCKMNKLGLEMDKFNMASVISSCGCISLLELGEQIFAKAIVSGLESDIIISISLVDFYSKCGLFEQGWKIFDGMVKVDEISWNSMIIGYATNGHGMEALNLFNEMRKANVIPSGITFTGVLSACNHCGLVEEGRKWFETMKRDYNINPSIEHYSCMVDLFARAGCLQEAVNVIENMSFEADVSMWSAVLRACVEHGNRTVGKMVAEKIIEFEPHNSGAHVQLASILAAIGDWEGSAKIWKAMREKKIQKNPGYSWADTGTIIAESVPAFTVNSV 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77039814 77041907 + Bma002921.1 Bma01g02099 76616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02099 697 Pfam E motif 618 678 IPR046848 -
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 400 464 IPR011990 GO:0005515
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 325 399 IPR011990 GO:0005515
Bma01g02099 697 PANTHER OS01G0913400 PROTEIN-RELATED 7 680 - -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 271 298 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 73 101 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 343 365 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 135 160 IPR002885 -
Bma01g02099 697 TIGRFAM PPR: pentatricopeptide repeat domain 104 135 IPR002885 -
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 501 691 IPR011990 GO:0005515
Bma01g02099 697 Pfam PPR repeat 73 102 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 476 499 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 343 366 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 45 72 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 575 599 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 402 432 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 374 399 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 240 263 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 211 235 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 135 160 IPR002885 -
Bma01g02099 697 Pfam PPR repeat 104 133 IPR002885 -
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Bma01g02099 697 PANTHER - 7 680 - -
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 25 101 IPR011990 GO:0005515
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 204 324 IPR011990 GO:0005515
Bma01g02099 697 Gene3D Tetratricopeptide repeat domain 102 194 IPR011990 GO:0005515
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Bma01g02099 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Bma01g02099 697 Pfam PPR repeat family 267 312 IPR002885 -
Bma01g02099 697 Pfam PPR repeat family 501 547 IPR002885 -
Bma01g02099 697 SUPERFAMILY TPR-like 347 679 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02099 - - - jre:108981365 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02099 Bma-Chr1:77039814 Bma10g00021 Bma-Chr10:320762 3.02E-45 dispersed
Bma01g02099 Bma-Chr1:77039814 Bma02g01043 Bma-Chr2:51951043 4.84E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016657 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6