Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02106 ATGATTCAGGGAAGAGGCAGTGCAGGCCAGATCGTCGGGTTCGGTTCAGTTATTGCCCTAGTGTGGCTGCTTGCTCAGCTGCAAAATGCCGATGCAGCCGTCTACACCGTGGGGGGAGGCCCTTCTGGGTGGACTTTTAACGTTGTGTCCTGGCCTCAGGGGAAGCGTTTCAGAGCCGGCGACTTGCTCATATTCAGCTATGATCCTTCGCAACACAACGTGGTTGTTGTGAACCGAGCTGGGTACGCAAACTGCAAAGCTCCAGTTGGATCGAAGGTGTATGGATCTGGGAATGATCGAGTGACACTCGTGAAGGGCGTCCAATACTTCATCTGCAGCGTTCCTGGGCACTGCGGATCTGGGATGAAGATTGCTGTTAATGCCCTTTAA 390 53.59 MIQGRGSAGQIVGFGSVIALVWLLAQLQNADAAVYTVGGGPSGWTFNVVSWPQGKRFRAGDLLIFSYDPSQHNVVVVNRAGYANCKAPVGSKVYGSGNDRVTLVKGVQYFICSVPGHCGSGMKIAVNAL 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77206610 77207117 - Bma002931.1 Bma01g02106 76623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02106 129 Gene3D - 33 128 IPR008972 -
Bma01g02106 129 Pfam Plastocyanin-like domain 44 122 IPR003245 GO:0009055
Bma01g02106 129 PANTHER BLUE COPPER PROTEIN 15 127 IPR039391 GO:0009055
Bma01g02106 129 PANTHER BLUE PROTEIN, PUTATIVE-RELATED 15 127 - -
Bma01g02106 129 SUPERFAMILY Cupredoxins 33 128 IPR008972 -
Bma01g02106 129 CDD Plantacyanin 33 128 IPR041844 -
Bma01g02106 129 ProSitePatterns Type-1 copper (blue) proteins signature. 106 122 IPR028871 -
Bma01g02106 129 ProSiteProfiles Phytocyanin domain profile. 33 129 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02106 - - - egr:104450887 164.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02106 Bma-Chr1:77206610 Bma15g00936 Bma-Chr15:34156575 5.39E-35 dispersed
Bma01g02106 Bma-Chr1:77206610 Bma01g00937 Bma-Chr1:9131455 5.26E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139