Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02108 ATGAAATCCACTACAAACTGCAGATTGAGGTGGTTTAATCAACTAGACCCTAGAATTAACCGAAGGCCATTTAGTGAGGAAGAAGAAAAAAGGCTTTTGGGAGTTCATAGAATTCATGGAAACAAGTGGGCCCTAATAGCCAGGCTATTTCCTGGTCGGACTGACAATGCTGTCAAGAATCACTGGCATGTTATTATGGCGAGAAAGCAAAGAGAACAATCCAAGATATGTGGAAAAAGAAATTACCAAAATTTATTCTTTGATGATCCAAACGCTTGTTATATTCATTTCCCAGGAATCAAAACCAAAGCCCAAAACGAATTCAGCTGTAAATTCTCTTTTCAAAATACCATTAGATTCTACAAAGACAGGTCTTTTTTTACTTCTTCCAGCTTTAGTTCTTCAGCTCGTTCGTTGAACTTTTCCTCCTCAAACCCAGCTTCAACCAGCTCTTTAATGGCGGATTTGTTCAGAAGAGAAGAAAAAGAGTATAACAGTTCAGAGAGTTCAAAAGGCATGGGTCAGCCAATTTACAGCAAATATCACAAACCTTCTCAAATATATGGAAATTCCAGGAGAAACACTGCATGTGGGATCCAACGGAGGATGGTTCCAAGTCCCTTCGGCATTTTCGATCTTGACGGCCGTATTGATCAGAATCTTACTCCATCACAAACAGGGAAGAAGATGAGGATGGAAAACACAGATGAACAGAAACAAGAAGACAAGTCCATTGAAATCAAAGAAATCCCTTTCATCGATTTTCTTGGCGTGGGAACCTCTTTATGA 789 39.42 MKSTTNCRLRWFNQLDPRINRRPFSEEEEKRLLGVHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKICGKRNYQNLFFDDPNACYIHFPGIKTKAQNEFSCKFSFQNTIRFYKDRSFFTSSSFSSSARSLNFSSSNPASTSSLMADLFRREEKEYNSSESSKGMGQPIYSKYHKPSQIYGNSRRNTACGIQRRMVPSPFGIFDLDGRIDQNLTPSQTGKKMRMENTDEQKQEDKSIEIKEIPFIDFLGVGTSL 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77211878 77212740 - Bma002933.1 Bma01g02108 76625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02108 262 MobiDBLite consensus disorder prediction 221 242 - -
Bma01g02108 262 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Bma01g02108 262 PANTHER MYB PROTEIN-RELATED 3 261 - -
Bma01g02108 262 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Bma01g02108 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 70 IPR017930 -
Bma01g02108 262 SMART sant 20 68 IPR001005 -
Bma01g02108 262 PANTHER TRANSCRIPTION FACTOR MYB56 3 261 - -
Bma01g02108 262 Gene3D - 23 84 - -
Bma01g02108 262 CDD SANT 23 63 IPR001005 -
Bma01g02108 262 Pfam Myb-like DNA-binding domain 21 64 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02108 K09422 MYBP; transcription factor MYB, plant - tcc:18592495 211.075
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02108 Bma04g00025 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02108 Bma-Chr1:77211878 Bma08g00113 Bma-Chr8:1407794 1.29E-41 dispersed
Bma01g02108 Bma-Chr1:77211878 Bma04g00025 Bma-Chr4:308389 7.37E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1194 Blo01g01322 . . . Bpe02g00617 Bpe04g00017 Bma04g00025 Bma01g02108 Cmo04g02532 Cmo15g00641 . Cma09g01074 . . Sed14g0960 Cpe06g00875 Cpe13g00658 Bhi04g01830 Tan11g1204 Cmetu05g0148 . . . . Cla08g00653 Cam08g1083 Cec08g0669 Cco08g0777 Clacu08g0787 . Cre08g0592 Cone4ag1448 . . . . . . Cme03g00424 . . . . . . . . . . Cmo09g01081 . . Car05g00777 Car15g00582 Cpe01g02093 . . . . . . . . . . . . . . . Lsi08g00513 . Chy03g00879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000239 3 4 3 7 4 5 8 5 5 4 5 5 8 5 5 8 5 4 9 5 5 5 4 3 5 6 5 9 5 4 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56768 PF00249 Myb_DNA-binding 3.50E-15 CL0123 Bma TF