Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02109 ATGTCTTTAGTAAGATCTGCAGAGTCATCTGTTATGGCATATGGAACTTCCAACTTTCACTCAATGAAGGGGAGTAATAATGCTACAAGCCTGTCCATCCAGACACTTGACTCCGACGAGCAAAAGGCAATGTACACGTCTGATTCTTACAGCAGTGAGAGCTATGAGAATTATTTTCTCGATTCTCCAACAGAAGAACCTATTGACGTATCATACTCCACGATCTATAGCCGTTCATTTCACCCACAAGTGGATTCCTATCAGCTACGAGCAGAAAGCCCCTTTGACCCTTCACTTGTATCAATCAGACAGCATAGCTCTTATCCATCGAATGTGGAAAAAGCTTACGTTGAAAGTCAAAGTACAGATCTAGTTGACTTTGATGAAGACCAGATTAGACTGAAATTACAAGAATTGGAGAGAGCACTCCTTGGTGATACTGATGTTACTGATTATGGTGACGAAGCCTTTATCACGGCCAAAGGCATGGAAATTGATGGAGAATGGAGTGATTCCATTAGGAATGAATTGAGTCATGATTCGCCCAAGGAAACTTCAACTTCCGATTCCTATCTGAGTGGTATTAGCAGTGAAAAGGACACATCACAAGTAATTTTGCAGAAACCGAAGCAATTGCTTTTAGATTGTGCGGCTATGATCTCAGACGGAAACGTCGAAGAGGCATCAGCCATGATAAGCCACCTACGCCAGATGGTTTCCATCCAAGGAGATCCGACTCAGAGGATTGCTGCTTACATGGTGGAAGGTCTTGTAGCTCGTATGGCTGACTCTGGAAAATTTCTGTACAAAGCTTTGAAATGCAAAGAGGCTACAACTTCTGATCGGCTGGCAGCTATGCAAATTCTCTTCGAGGTTTGCCCTTGCTTTAAATTTGGATTTATGACTGCCAACTTTTCGATCTTAGGGGCGTGCAAAGATGAGAAAAGAGTTCACATAATAGATTTCGACATAAACCAAGGGACTCCATACATGGCATTGATTCAAATGCTGAAGACTCTACCGGGCAAGCCGCCTCACCTGAGGTTAACAGGGGTTGATGATCCCGAGACGGTTCAACGTCCTGTCGGGGGCCTAAAAAACATCGGACAAAGGCTTGAAATGCTGGCAAAAACACTGGGAGTGTCATTCGAGTTTCAAGCCGTGGCCTCCAAGACTTCGTTAGTGACGCCCTCGACGCTAGACTGCCGACCAGGAGAGGCAGTCATCGTGAATTTTGCGTTTCAACTTCACCACATGCCCGACGAAAGTGTTTCAACGATAAACATGCGGGACCAGCTTCTTCGCATGGTTAAAAGCTTGAAGCCAAAACTAGTGACAGTTGTGGAGCAAGACGTCAACACAAACACAAACCCGTTTTTCACAAGATTCGTAGAAGCTTACAATTACTATTCGGCCATATTCGAGTCTCTCGATGTAACACTCCCTCGAGACAGTCAGGATCGGATGAATGTGGAGAGGCAGTGTCTTGCAAGGGACATAGTTAATATTGTGGCATGTGAAGGCGAGGAAAGAATAGAACGATATGAAATGGCGGGAAAATGGAGGGCAAGGATGGCAATGGCCGGATTTACTTCTTGTGCAGCGAGCTCGGATACGATTGAATCGATAAAGAAACTCATCGGGGAGTATTGTGACAAGTTCAAAGTGAAGGAGGAAATGGGCGCCCTTCACTTTGGGTGGGAAGACAAGAACTTGATCGTTGCCTCTGCGTGGAGGTGA 1740 45.11 MSLVRSAESSVMAYGTSNFHSMKGSNNATSLSIQTLDSDEQKAMYTSDSYSSESYENYFLDSPTEEPIDVSYSTIYSRSFHPQVDSYQLRAESPFDPSLVSIRQHSSYPSNVEKAYVESQSTDLVDFDEDQIRLKLQELERALLGDTDVTDYGDEAFITAKGMEIDGEWSDSIRNELSHDSPKETSTSDSYLSGISSEKDTSQVILQKPKQLLLDCAAMISDGNVEEASAMISHLRQMVSIQGDPTQRIAAYMVEGLVARMADSGKFLYKALKCKEATTSDRLAAMQILFEVCPCFKFGFMTANFSILGACKDEKRVHIIDFDINQGTPYMALIQMLKTLPGKPPHLRLTGVDDPETVQRPVGGLKNIGQRLEMLAKTLGVSFEFQAVASKTSLVTPSTLDCRPGEAVIVNFAFQLHHMPDESVSTINMRDQLLRMVKSLKPKLVTVVEQDVNTNTNPFFTRFVEAYNYYSAIFESLDVTLPRDSQDRMNVERQCLARDIVNIVACEGEERIERYEMAGKWRARMAMAGFTSCAASSDTIESIKKLIGEYCDKFKVKEEMGALHFGWEDKNLIVASAWR 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77250880 77252619 + Bma002935.1 Bma01g02109 76626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02109 579 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 14 578 IPR030011 GO:0003700|GO:0005634
Bma01g02109 579 Pfam GRAS domain family 210 579 IPR005202 -
Bma01g02109 579 ProSiteProfiles GRAS family profile. 200 579 IPR005202 -
Bma01g02109 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 578 IPR005202 -
Bma01g02109 579 MobiDBLite consensus disorder prediction 174 195 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02109 Bma01g00877 CCT
Bma01g00877 Bma01g02109 ECH
Bma01g02109 Bma01g00877 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00877 Bma-Chr1:8245315 Bma01g02109 Bma-Chr1:77250880 1.51E-52 dispersed
Bma01g02109 Bma-Chr1:77250880 Bma14g00364 Bma-Chr14:4406307 2.50E-142 dispersed
Bma14g00513 Bma-Chr14:5703080 Bma01g02109 Bma-Chr1:77250880 7.96E-59 dispersed
Bma01g02109 Bma-Chr1:77250880 Bma02g01308 Bma-Chr2:55213484 1.53E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56769 PF03514 GRAS 2.00E-132 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02109 - - qsu:111984328 798.119