Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02124 CTCTCTACTCTGATGGCGTTAGATTTCATCCCAGGGTTTCCCCCTAACATCGAAGGTCGGCAGATGGCTCTACAGGAAGCTGCCTCTCAAGGCATCAAAAGCATGGAGCGCCTCATCTACGTCCTGTCTCAGAAGCAGCAATCTACTCACTCGGACTGCGCCGATCTCACCGACGCTACCGTTTCGAAGTTCAAAAATGTCATTTCACTTCTCAACCGGACCGGTCATGCGCGGTTCAGGCGCGGTCCGACTTTCTCTCCCTCCTCCTCTTCCGCGTCTCTCTCCGTTCCTCACTTACAGACTTTGAACGTCACGCCGGCTACTTTTACTCCTCCGGTGACTGTCTCTACCGCTCCAATTGTTCCTCCGGCGAGCTTCGTTCAGCCTCAGCCGCAGAGGATGACCCTTGATTTCACGAAACCTAGTATTTTGAGCTCAAATGTTAAAAGTGCCGAGCTCGAGTTCACTAAGGAGAGCTTCAGCGTCTCGTCCAGCTGCTCGTTCATGTCGTCAAACATCACCGGAGATGGGAGCGTATCGAACGGAAAGCTCGGATCTTCGATCTTCCTGTCCACCGCACCAACAGTCTCCGCCGGGAAGCCGCCTCTCTCATCGGCGCTCTATAAGAAGAGGTGTCACTCCCACTCCCTCTCCCACTCCCACTCCCACTCCGAAAACGTGTCCGGTAAACTTTCCGGTTCAACTACCGCATCCGGCAAGTGCCACTGCTCCAAAAGAAGGAAGAATCGGGTAAAGAAAACAATCAGAGTGCCGGCGGTGAGTTCAAAGATAGCGGACATTCCGCCGGACGAGTACTCGTGGAGAAAATACGGGCAGAAGCCGATCAAAGGGTCACCGTACCCACGGGGATACTACAAGTGCAGTACAGTCAGAGGATGCCCCGCCAGGAAACACGTAGAGAGGGCCACGGATGATACGACGATGCTGATCGTAACGTACGAGGGGGAGCACCGTCATGCGCCGGGCGGGATGGAGGAGAACGCCGGCGTGTTGGTGTTAGAGTCAATGTGA 1032 54.84 LSTLMALDFIPGFPPNIEGRQMALQEAASQGIKSMERLIYVLSQKQQSTHSDCADLTDATVSKFKNVISLLNRTGHARFRRGPTFSPSSSSASLSVPHLQTLNVTPATFTPPVTVSTAPIVPPASFVQPQPQRMTLDFTKPSILSSNVKSAELEFTKESFSVSSSCSFMSSNITGDGSVSNGKLGSSIFLSTAPTVSAGKPPLSSALYKKRCHSHSLSHSHSHSENVSGKLSGSTTASGKCHCSKRRKNRVKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDTTMLIVTYEGEHRHAPGGMEENAGVLVLESM 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77734156 77735793 + Bma002963.1 Bma01g02124 76641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02124 343 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 20 334 - -
Bma01g02124 343 Pfam WRKY DNA -binding domain 270 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g02124 343 SMART WRKY_cls 268 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g02124 343 Pfam Plant zinc cluster domain 209 266 IPR018872 -
Bma01g02124 343 Gene3D WRKY domain 254 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g02124 343 SUPERFAMILY WRKY DNA-binding domain 266 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g02124 343 MobiDBLite consensus disorder prediction 217 247 - -
Bma01g02124 343 MobiDBLite consensus disorder prediction 221 240 - -
Bma01g02124 343 ProSiteProfiles WRKY domain profile. 263 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g02124 343 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 334 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02124 Bma-Chr1:77734156 Bma04g00033 Bma-Chr4:369663 3.59E-160 dispersed
Bma01g02124 Bma-Chr1:77734156 Bma01g00400 Bma-Chr1:3338515 1.12E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56770 PF03106 WRKY 2.60E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02124 - - bhj:120087087 417.927