Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02125 | TTTTCAGTCGGAATGGCTGACATTGTAATTGACAAATTAATATCTGCTAGAAAATATTTGAAGTTTAGCTTGGAGAAATCTAAGTCTTTAGGATCAGCTCTTGATAGAACAGGCCCCAGATTGGAAGAGATTAAGCGGAGATTACCTACCCTAGAGGTGGCTGTCCGGCCTATCCGTGCCCACAAGGATGCTCTAGCTGCAGTTGGTGGTCATATTAACCGAGCAGTAGGACCTGCAGCTGCTGTCCTTAAAGTTTTTGACGCCATTCACGGACTTGAAAAGTCACTTTTATCAGATCCACGCAGTGATTTATCTGGATATCTGTCGGTGTTGAAACGCCTTGAAGAGGCATTGAGGTTTTTGGGTGACAATTGTGGATTGGCAATTCAGTGGTTGGAGGATATAGTGGAGTACCTACATGATAATACTGTGGCAGATGAGCGATACATAGCAAACTTGAAGAGTTTGCTGGTAAATCTACGAGAATTGCAGTTTGATAAGGAAATTGGACATCTTGATGGGGGGCTTTTGGATGCCGCATCAGACAAATTAGAAAATGAGTTTCGGAGGCTACTAACTGAGCACAGTGTGCCTCTTCCAATGTCTTCTCCCTCCTTGGTTGGAGAGCAAGCAGCCATTGCACCATCACCTTTACCTGTAGCTGTCATTCAAAAATTGCAGGCTATTGTGAAACATTTGTTTGAGGCAGAACATAAGCTTTGTAAAGAAGTAATGGAGACACTTGGACAGGAAATATGGATGGGCTGCTTTGCGAAGATAGCAGCTCATTCTGGCATTATTGCGTTTCTTCAGTTTGGGAAAACAGTTACAGAGAGTAAGATGAATCCCATTAAATTATTGATGTTGTTAGATATATTTGCATCATTGAATAAATTGAGGCTGGACTTTAGCCGTGTGTTATTGGCTTTGGAGAGATTGCAACAAGAAGAAGAGCTAACATATGAGCAAGTATTTCTTCTGGAGAATAACTTGTTCCTCAATGGATTAAACTTCAGGGATCAGCATAGAGACATGAGGCTGGACATTGATAATATGTCCTATGAGGAACTATTAGCTCTGGAAGAGAAAATGGGAAGTGTGAGCATAGCTCTATCTGAAGAAGAAATGACAAAATGCTTGACGAGAAGCGTGTATCATTCCACTCCAGAAGGCGGAATCTTAAGTCTTCGCGAGGACAGTGATGATTTCAAGTGCTGTATTTGTCAGGAAGAATATGCAAATGGAGATGAAATTGGGTGTTTACAATGCAAACATAAATTTCACGTGGTTTGCATACAAGAATGGCTGCGACTGAAGAACTGGTGCCCTGTCTGCAAGTCATCTGCCACTGTAGCCGACTCATAG | 1365 | 41.98 | FSVGMADIVIDKLISARKYLKFSLEKSKSLGSALDRTGPRLEEIKRRLPTLEVAVRPIRAHKDALAAVGGHINRAVGPAAAVLKVFDAIHGLEKSLLSDPRSDLSGYLSVLKRLEEALRFLGDNCGLAIQWLEDIVEYLHDNTVADERYIANLKSLLVNLRELQFDKEIGHLDGGLLDAASDKLENEFRRLLTEHSVPLPMSSPSLVGEQAAIAPSPLPVAVIQKLQAIVKHLFEAEHKLCKEVMETLGQEIWMGCFAKIAAHSGIIAFLQFGKTVTESKMNPIKLLMLLDIFASLNKLRLDFSRVLLALERLQQEEELTYEQVFLLENNLFLNGLNFRDQHRDMRLDIDNMSYEELLALEEKMGSVSIALSEEEMTKCLTRSVYHSTPEGGILSLREDSDDFKCCICQEEYANGDEIGCLQCKHKFHVVCIQEWLRLKNWCPVCKSSATVADS | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 77736610 | 77746745 | + | Bma002964.1 | Bma01g02125 | 76642 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02125 | 454 | SMART | ring_2 | 405 | 445 | IPR001841 | - | |
Bma01g02125 | 454 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 381 | 453 | IPR013083 | - | |
Bma01g02125 | 454 | Pfam | Exo70 exocyst complex subunit | 223 | 307 | IPR046364 | GO:0000145|GO:0005546|GO:0006887 | |
Bma01g02125 | 454 | ProSiteProfiles | Zinc finger RING-type profile. | 405 | 446 | IPR001841 | - | |
Bma01g02125 | 454 | PANTHER | EXOCYST SUBUNIT EXO70 FAMILY PROTEIN | 230 | 307 | - | - | |
Bma01g02125 | 454 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 10 | 230 | IPR004140 | GO:0000145|GO:0006887 | |
Bma01g02125 | 454 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 230 | 307 | IPR004140 | GO:0000145|GO:0006887 | |
Bma01g02125 | 454 | SUPERFAMILY | Cullin repeat-like | 82 | 311 | IPR016159 | - | |
Bma01g02125 | 454 | SUPERFAMILY | RING/U-box | 399 | 450 | - | - | |
Bma01g02125 | 454 | Coils | Coil | 296 | 316 | - | - | |
Bma01g02125 | 454 | Pfam | Ring finger domain | 404 | 446 | IPR001841 | - | |
Bma01g02125 | 454 | Gene3D | Exocyst complex component Exo70 | 133 | 323 | - | - | |
Bma01g02125 | 454 | PANTHER | EXOCYST SUBUNIT EXO70 FAMILY PROTEIN | 10 | 230 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02125 | Bma01g01312 | CCT | |
Bma01g02125 | Bma02g00056 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01312 | Bma-Chr1:17911667 | Bma01g02125 | Bma-Chr1:77736610 | 1.78E-63 | dispersed | |
Bma01g02125 | Bma-Chr1:77736610 | Bma04g00034 | Bma-Chr4:372870 | 5.74E-34 | dispersed | |
Bma08g00004 | Bma-Chr8:94838 | Bma01g02125 | Bma-Chr1:77736610 | 1.03E-28 | dispersed | |
Bma08g00043 | Bma-Chr8:620757 | Bma01g02125 | Bma-Chr1:77736610 | 1.94E-28 | dispersed | |
Bma12g00439 | Bma-Chr12:11073626 | Bma01g02125 | Bma-Chr1:77736610 | 6.51E-28 | dispersed | |
Bma01g02121 | Bma-Chr1:77629710 | Bma01g02125 | Bma-Chr1:77736610 | 2.88E-43 | proximal | |
Bma01g02122 | Bma-Chr1:77636854 | Bma01g02125 | Bma-Chr1:77736610 | 7.36E-107 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02125 | K07195 | - | tcc:18587636 | 341.658 |