Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02125 TTTTCAGTCGGAATGGCTGACATTGTAATTGACAAATTAATATCTGCTAGAAAATATTTGAAGTTTAGCTTGGAGAAATCTAAGTCTTTAGGATCAGCTCTTGATAGAACAGGCCCCAGATTGGAAGAGATTAAGCGGAGATTACCTACCCTAGAGGTGGCTGTCCGGCCTATCCGTGCCCACAAGGATGCTCTAGCTGCAGTTGGTGGTCATATTAACCGAGCAGTAGGACCTGCAGCTGCTGTCCTTAAAGTTTTTGACGCCATTCACGGACTTGAAAAGTCACTTTTATCAGATCCACGCAGTGATTTATCTGGATATCTGTCGGTGTTGAAACGCCTTGAAGAGGCATTGAGGTTTTTGGGTGACAATTGTGGATTGGCAATTCAGTGGTTGGAGGATATAGTGGAGTACCTACATGATAATACTGTGGCAGATGAGCGATACATAGCAAACTTGAAGAGTTTGCTGGTAAATCTACGAGAATTGCAGTTTGATAAGGAAATTGGACATCTTGATGGGGGGCTTTTGGATGCCGCATCAGACAAATTAGAAAATGAGTTTCGGAGGCTACTAACTGAGCACAGTGTGCCTCTTCCAATGTCTTCTCCCTCCTTGGTTGGAGAGCAAGCAGCCATTGCACCATCACCTTTACCTGTAGCTGTCATTCAAAAATTGCAGGCTATTGTGAAACATTTGTTTGAGGCAGAACATAAGCTTTGTAAAGAAGTAATGGAGACACTTGGACAGGAAATATGGATGGGCTGCTTTGCGAAGATAGCAGCTCATTCTGGCATTATTGCGTTTCTTCAGTTTGGGAAAACAGTTACAGAGAGTAAGATGAATCCCATTAAATTATTGATGTTGTTAGATATATTTGCATCATTGAATAAATTGAGGCTGGACTTTAGCCGTGTGTTATTGGCTTTGGAGAGATTGCAACAAGAAGAAGAGCTAACATATGAGCAAGTATTTCTTCTGGAGAATAACTTGTTCCTCAATGGATTAAACTTCAGGGATCAGCATAGAGACATGAGGCTGGACATTGATAATATGTCCTATGAGGAACTATTAGCTCTGGAAGAGAAAATGGGAAGTGTGAGCATAGCTCTATCTGAAGAAGAAATGACAAAATGCTTGACGAGAAGCGTGTATCATTCCACTCCAGAAGGCGGAATCTTAAGTCTTCGCGAGGACAGTGATGATTTCAAGTGCTGTATTTGTCAGGAAGAATATGCAAATGGAGATGAAATTGGGTGTTTACAATGCAAACATAAATTTCACGTGGTTTGCATACAAGAATGGCTGCGACTGAAGAACTGGTGCCCTGTCTGCAAGTCATCTGCCACTGTAGCCGACTCATAG 1365 41.98 FSVGMADIVIDKLISARKYLKFSLEKSKSLGSALDRTGPRLEEIKRRLPTLEVAVRPIRAHKDALAAVGGHINRAVGPAAAVLKVFDAIHGLEKSLLSDPRSDLSGYLSVLKRLEEALRFLGDNCGLAIQWLEDIVEYLHDNTVADERYIANLKSLLVNLRELQFDKEIGHLDGGLLDAASDKLENEFRRLLTEHSVPLPMSSPSLVGEQAAIAPSPLPVAVIQKLQAIVKHLFEAEHKLCKEVMETLGQEIWMGCFAKIAAHSGIIAFLQFGKTVTESKMNPIKLLMLLDIFASLNKLRLDFSRVLLALERLQQEEELTYEQVFLLENNLFLNGLNFRDQHRDMRLDIDNMSYEELLALEEKMGSVSIALSEEEMTKCLTRSVYHSTPEGGILSLREDSDDFKCCICQEEYANGDEIGCLQCKHKFHVVCIQEWLRLKNWCPVCKSSATVADS 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77736610 77746745 + Bma002964.1 Bma01g02125 76642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02125 454 SMART ring_2 405 445 IPR001841 -
Bma01g02125 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 381 453 IPR013083 -
Bma01g02125 454 Pfam Exo70 exocyst complex subunit 223 307 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bma01g02125 454 ProSiteProfiles Zinc finger RING-type profile. 405 446 IPR001841 -
Bma01g02125 454 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 230 307 - -
Bma01g02125 454 PANTHER EXOCYST COMPLEX PROTEIN EXO70 10 230 IPR004140 GO:0000145|GO:0006887
Bma01g02125 454 PANTHER EXOCYST COMPLEX PROTEIN EXO70 230 307 IPR004140 GO:0000145|GO:0006887
Bma01g02125 454 SUPERFAMILY Cullin repeat-like 82 311 IPR016159 -
Bma01g02125 454 SUPERFAMILY RING/U-box 399 450 - -
Bma01g02125 454 Coils Coil 296 316 - -
Bma01g02125 454 Pfam Ring finger domain 404 446 IPR001841 -
Bma01g02125 454 Gene3D Exocyst complex component Exo70 133 323 - -
Bma01g02125 454 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 10 230 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02125 Bma01g01312 CCT
Bma01g02125 Bma02g00056 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01312 Bma-Chr1:17911667 Bma01g02125 Bma-Chr1:77736610 1.78E-63 dispersed
Bma01g02125 Bma-Chr1:77736610 Bma04g00034 Bma-Chr4:372870 5.74E-34 dispersed
Bma08g00004 Bma-Chr8:94838 Bma01g02125 Bma-Chr1:77736610 1.03E-28 dispersed
Bma08g00043 Bma-Chr8:620757 Bma01g02125 Bma-Chr1:77736610 1.94E-28 dispersed
Bma12g00439 Bma-Chr12:11073626 Bma01g02125 Bma-Chr1:77736610 6.51E-28 dispersed
Bma01g02121 Bma-Chr1:77629710 Bma01g02125 Bma-Chr1:77736610 2.88E-43 proximal
Bma01g02122 Bma-Chr1:77636854 Bma01g02125 Bma-Chr1:77736610 7.36E-107 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02125 K07195 - tcc:18587636 341.658