Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02143 ATGTCTGCTCCTGCTCTGCCCGAAACCCCCATGGACGAACTGAACCAACTGCCTCCTGATAATGAAGATTCGTCCAAATCTTTGAGCAAAAAGGCTGCTAAGAAAGAAGCCAAGAAGCTAGAGAAGCAACGCCCTCGACAAGAATCTGCTCAATCTTCGTTGTCTTCTCTCTCCATGGAGGATGATCCGCTTTCCGCCAATTACGGAGACGTTCCTCTCTCTGACCTCCAATCCAAGGAGCTCCAGGATATCCACGACTGGACTGAGGTCGTGACTCTTACCGAAGAGCTGAAGGACAAGTTTGTGCTGTTACGCGGCCGCGTACAGACGATCCGAGCCGTTGGCAAGAAGATGGCTTTCCTTGTGCTTAGAGAGAGTGGATTCACTGTCCAATGCGTCGTCACTGAACAACCCGAATATGTTAGCCGCCAAATGGTTAGGTTTGTGGCGGGGTTGAGTCGTGAGTCAATTATTGACATTGTAGGGGTTGTATCCGTGCCTGGTGTCCCAATTAAAGGGGCCTCACAACAGGTAGAAATTCAGGTGAGGAAATTATTTTGCATAAGCAGGGCCATGCCAACTCTACCTATAAATATAGAGGATGCTGCTAGAAGTGAAGCTGAAATCGAAAAGGCGCTGGTAGCTGCTGAAGATAAGCAACTTGTACGTGTTAATCAAGATACAAGATTAAATTTCAGAGTTCTTGATATGCGGATACCGTCTAATCAGGGAATCTTCTATATTCAATTTCAAGTTGGAACTATATTTAGACAATTCTTGATATCCGAAAGCTTTGTTGAGATCCACACACCAAAATTGATAGCTGGCTCTAGTGAAGGTGGTGCTTCTGTTTTTAAGTTGGATTACAAAGGGCAGCCAGCATGCTTGGCACAGTCACCTCAACTTCATAAGCAAATGGCAATTTGTGGAGATTTTCGAAGAGTGTTCGAGATCGGTCCTGTTTTTCGGGCAGAGGACTCAAATACTCACCGTCACTTGTGTGAGTTTACGGGTCTTGATGTTGAAATGCAGATTAAGAAGCACTATTTTGAGGTGATGGATATAGTTGATCGTTTATTTGTATCAATGTTTGACAGTTTAAACCAGAACTGTGAGGAGCAGCTTAAAGCTGTGGGGAGGCAATATCCTTTTGAACCTTTGAAGTATTTGAGAAAGACTCTACGACTTACATTTGAAGAAGGGATTCAAATGCTTAAGGATGCTGGGGTAGAAGTTGATCCTCTTGGTGACCTGAATACTGAGACGGAGAAGAAGTTGGGTCAACTAGTTTTACAGAAGTATGGAACAGAATTTTACATACTTCACCGGTATCCTTTGGCTGTCAGACCATTCTATACTATGCCTTGCTATGATAATCCAGCATACAGTAACTCCTTTGATGTTTTTATACGAGGAGAGGAGATAATTTCAGGTGCGCAGCGTGTACACGTACCAGAATTCCTGGCTGAACGTGCCCAAGCATGCGGCATTGACGTGAAAACAATTGAGACATACATTGATTCCTTCAGATATGGAGCTCCTCCTCATGGTGGATTTGGAGTCGGGTTGGAGCGGGTGGTAATGCTTTTCTGTGGATTGAACAACATTCGGAAAACATCATTGTTCCCTCGTGACCCCCAAAGGCTCGCCCCTTAA 1656 44.63 MSAPALPETPMDELNQLPPDNEDSSKSLSKKAAKKEAKKLEKQRPRQESAQSSLSSLSMEDDPLSANYGDVPLSDLQSKELQDIHDWTEVVTLTEELKDKFVLLRGRVQTIRAVGKKMAFLVLRESGFTVQCVVTEQPEYVSRQMVRFVAGLSRESIIDIVGVVSVPGVPIKGASQQVEIQVRKLFCISRAMPTLPINIEDAARSEAEIEKALVAAEDKQLVRVNQDTRLNFRVLDMRIPSNQGIFYIQFQVGTIFRQFLISESFVEIHTPKLIAGSSEGGASVFKLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSNTHRHLCEFTGLDVEMQIKKHYFEVMDIVDRLFVSMFDSLNQNCEEQLKAVGRQYPFEPLKYLRKTLRLTFEEGIQMLKDAGVEVDPLGDLNTETEKKLGQLVLQKYGTEFYILHRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLAP 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77947567 77951302 - Bma002985.1 Bma01g02143 76660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02143 551 CDD AsxRS_core 223 547 - -
Bma01g02143 551 SUPERFAMILY Class II aaRS and biotin synthetases 220 550 IPR045864 -
Bma01g02143 551 Pfam tRNA synthetases class II (D, K and N) 226 545 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma01g02143 551 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 256 543 IPR006195 -
Bma01g02143 551 TIGRFAM aspS_nondisc: aspartate--tRNA(Asn) ligase 91 551 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bma01g02143 551 Coils Coil 199 219 - -
Bma01g02143 551 Gene3D - 60 194 IPR012340 -
Bma01g02143 551 PANTHER ASPARTATE--TRNA LIGASE, CYTOPLASMIC 22 551 - -
Bma01g02143 551 MobiDBLite consensus disorder prediction 24 46 - -
Bma01g02143 551 MobiDBLite consensus disorder prediction 47 61 - -
Bma01g02143 551 PRINTS Aspartyl-tRNA synthetase signature 313 326 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma01g02143 551 PRINTS Aspartyl-tRNA synthetase signature 466 482 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma01g02143 551 PRINTS Aspartyl-tRNA synthetase signature 296 308 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma01g02143 551 PRINTS Aspartyl-tRNA synthetase signature 506 520 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma01g02143 551 Gene3D Bira Bifunctional Protein; Domain 2 196 551 IPR045864 -
Bma01g02143 551 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 89 551 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bma01g02143 551 Coils Coil 30 50 - -
Bma01g02143 551 CDD AspRS_cyto_N 102 201 - -
Bma01g02143 551 PANTHER ASPARTYL-TRNA SYNTHETASE 22 551 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Bma01g02143 551 SUPERFAMILY Nucleic acid-binding proteins 66 194 IPR012340 -
Bma01g02143 551 MobiDBLite consensus disorder prediction 1 61 - -
Bma01g02143 551 Pfam OB-fold nucleic acid binding domain 102 185 IPR004365 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02143 K22503 DARS1; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101222217 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02143 Bma-Chr1:77947567 Bma10g00652 Bma-Chr10:9368215 1.07E-25 dispersed
Bma01g02143 Bma-Chr1:77947567 Bma01g00381 Bma-Chr1:3130870 1.12E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007164 1 1 2 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36