Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02145 ATGACGACTCTGTCGTCGTCGGAAACGAGGTCGCCGTTTCCGCTGCTTTTCAGGAGACACTCAAGTGGCGAGGTAAGAAACTTAACGTCGGTTTCGAGTAGTCTCTTGCCGGCGTTCGGAACAGTCGTAGATGAAGGATATTTGCACCTCAGAAAATTCATCATTGTTCCCTATGATCGTAGATATCGCAGGTTATGGCAGACCTTTCTGGTTGTACTAGTGTTGTACTCAGCGTGGGCATCTCCTTTCGAACTAGCCTTCAAAAAAGTGGCAACTGGGTCTCTCCTGCCCGTTGATTTAGTTGTCGATGGCTTCTTTGCCATTGATATAGTCTTGACTTTCTTTGTGGCATACTTGGATAAATCAACCTATCTCCTCGTTGATGATCATAAGAAGATAGCAAGAAGATACCTTACTAGCCTGTGGTTTCCTATGGACGTAGCCTCAACTCTTCCATATCAAATAATATACAGAATTTTCACCGGAGACTTGCACCACAATGGCGAGACCTTTGGTTTCCTCAACTTTCTCCGCTTTTGGCGACTCAGGCGTGTTAGCCAGCTCTTTGCTAGGCTAGAGAAAGATACGCGCTTCAGCTACTTTTGGACAAGATATATCAAACTAATTTGCGTGACGTTGTTTGTTGTGCATGGAGCAGGGTGCTTTTACTTTTGGATGGCAACTCGTTACAAAGATTCAGCAAACACGTGGATTGGAGTGGAAGTCCCGGACTTTGAGCAGCAAAGCATCTGGATCTGCTATACTTACTCCATTTACTGGTCTATTGTCACCCTCGCTACCGTTGGCTATGGCGACCTGCACGCAGTCAATATGGGGGAGAAGATATTTAGCATCTTCTACATGCTCTTCAACATCAGCCTCACAGCTTATTTGATTGGCAACATGACAAATATGCTAATCCATGAGATACTAAGATATGCAAGCAAGAGTAGGCTACCAGACGGGTTAAAAGCCCAAATGCTGGCACACATGCAGCTAAAGTTCAAGACAGCAGAACTGCAGCAAGCAGAGGTGCTTGGGGACTTGCCTAAAGCAATAAGATCAAGCATTGCTCAGCACCTGTTTCGAAGAACAGTGGAAGATGCATACCTATTCAAGGGAGTCTCTGAAGATCTGATTGTGCAATCGGTAGCAGAGATGAAAGCGGAATATTTTCCACCCAAAGTCGATATTATATTGCAAAACGAGATACCCACAGATTTCTACATTTTGGTATCTGGATCAGTGGAAATTCATGCTTATGCATTACAAAGTGACATACTGGTATGTTTTTGCGTTGAACTGAAAGTTCTTTTACAGATTCTAACCAGACTAGGACCAGGAGACATGGCAGGAGAAATTGGGGTACTGTTTAATATTCCACAACCTTTCACAGTAAGAACAAAGAGGCTTTCTCAGGTTGTGCGCATCGGTCATCATAGTATCAAGCAGATGATACAACCACACAGTGATGGGAAGATAATTATCTCTAACTTCATACAGTATTTGAAGGGCTTGAAACAAGAGTTGCTTGATGAAATACCATATCTCAAGGACTTGCTCGGTGACTTGAATATAGAGGTTTGTTTTTTTGTTCATATTTTTGTCTACAAACTTTGCATACCGAACACTTTAGTTACTCGATCAACACTTCCCAAGAGGGTGATAATTCATGGACATCATCCAGACAAAGATACCAATAAAAATGACAGCATGAGAAAACTTGTACATCTGCCAAATTCAGTAGAAGAACTCATTATATTAGCAGAGAAGAAGTTTGGCAAAAAAGGAAAAACAATTCTAATGGCTGATGGCTCTGAAGTAGAGGACTTGAATGCTTTAAGAGAGGGCGATCACTTATTTATTGTATGA 1872 42.25 MTTLSSSETRSPFPLLFRRHSSGEVRNLTSVSSSLLPAFGTVVDEGYLHLRKFIIVPYDRRYRRLWQTFLVVLVLYSAWASPFELAFKKVATGSLLPVDLVVDGFFAIDIVLTFFVAYLDKSTYLLVDDHKKIARRYLTSLWFPMDVASTLPYQIIYRIFTGDLHHNGETFGFLNFLRFWRLRRVSQLFARLEKDTRFSYFWTRYIKLICVTLFVVHGAGCFYFWMATRYKDSANTWIGVEVPDFEQQSIWICYTYSIYWSIVTLATVGYGDLHAVNMGEKIFSIFYMLFNISLTAYLIGNMTNMLIHEILRYASKSRLPDGLKAQMLAHMQLKFKTAELQQAEVLGDLPKAIRSSIAQHLFRRTVEDAYLFKGVSEDLIVQSVAEMKAEYFPPKVDIILQNEIPTDFYILVSGSVEIHAYALQSDILVCFCVELKVLLQILTRLGPGDMAGEIGVLFNIPQPFTVRTKRLSQVVRIGHHSIKQMIQPHSDGKIIISNFIQYLKGLKQELLDEIPYLKDLLGDLNIEVCFFVHIFVYKLCIPNTLVTRSTLPKRVIIHGHHPDKDTNKNDSMRKLVHLPNSVEELIILAEKKFGKKGKTILMADGSEVEDLNALREGDHLFIV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 77959850 77966386 + Bma002987.1 Bma01g02145 76662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02145 623 Pfam Ion transport protein 64 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma01g02145 623 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 4 622 - -
Bma01g02145 623 Pfam Cyclic nucleotide-binding domain 391 487 IPR000595 -
Bma01g02145 623 SUPERFAMILY cAMP-binding domain-like 307 492 IPR018490 -
Bma01g02145 623 Pfam KHA, dimerisation domain of potassium ion channel 553 622 IPR021789 -
Bma01g02145 623 ProSiteProfiles KHA domain profile. 554 623 IPR021789 -
Bma01g02145 623 Gene3D - 64 308 - -
Bma01g02145 623 PRINTS EAG/ELK/ERG potassium channel family signature 280 291 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g02145 623 PRINTS EAG/ELK/ERG potassium channel family signature 99 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g02145 623 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g02145 623 PRINTS EAG/ELK/ERG potassium channel family signature 254 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bma01g02145 623 CDD CAP_ED 371 491 IPR000595 -
Bma01g02145 623 Gene3D Jelly Rolls 339 520 IPR014710 -
Bma01g02145 623 SUPERFAMILY Voltage-gated potassium channels 61 306 - -
Bma01g02145 623 ProSiteProfiles cAMP/cGMP binding motif profile. 371 491 IPR000595 -
Bma01g02145 623 SMART cnmp_10 371 501 IPR000595 -
Bma01g02145 623 PANTHER POTASSIUM CHANNEL AKT1 4 622 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02145 Bma-Chr1:77959850 Bma07g00455 Bma-Chr7:5495345 5.17E-172 dispersed
Bma01g02145 Bma-Chr1:77959850 Bma04g00048 Bma-Chr4:469210 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02145 K21867 - csin:114306787 872.078