Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02151 ATGTCCAACAACCATGTGCCACAGCAGTTTGCAATACCATCTATCGAGATTGGCCATTTGCAGCCTAGTTCTAACAACATGGAATTACCTTTATCAGAACTGCATGGATCATTTGGATCTTTACTCTATGATCCTTCATTTAGTCAATATTCATTAGCATCAAAACCAATGGAAGTGATGGCATCTGTTTCAGGTACTCCTATGTCACAAAGTTTACTAGTATCACATATGCAGATAAGCCAGATTGATTCCAAGCCCACTAATCTAGTGTCACAGAAAATTCAAGGATCCAACTACCAATTTGGAATGGTTAATAACATGATAGGAATGGATGCTTCTAAGAAGTTTTCCCTGCCTGCTAAAAGGAAATCTCCATTGGAATCTATACCTCATAGTCTTGCCTCACTGCAGCCATCATTCCCTAACAAGCGACCTGAAAAGTTCGGACATATACCTTGGTTACAAAATGTCACTGGAATAAATAAAACTGTCTTGGAGATGCAATCTACAGTCCCAACACCACATATATCTCCCGGAACAAGTAAGAAAGTGGCAATTGAAGCTCTTTCTGTTAAATCTGGACCTCAACGATCAACTATTAAAACTCAGTCTACAATGGTACTGCCAAAGATTCGGACTGAATCATTTGAATTAGTAAGGTCCAAAATGAAGGAATCCTTAGCTGCGGCGCTTGGCTTGGCTTCTCAGCAGGTTGACCGTTCCTTAGAAACTGGCAAAAGTTTTCGAAATGATGGTGAAAGAATTGTGAGTCTAATGGAGGAATGTTCTCAACCTATTGGTCCGGTTTGTACTGTTCCGGATGTTGTTAATAATGTAGTGGAGGTACGAGGGGGAAATTTATCTGTGAAAGAAGATGTTTCTGCTTGTCAAGGCAAAAAAATCTGTGATAAATCATATAATCTTTTTGAAAATTCAGATAAGGGAAATACACACACTTTGATACCTGGTGCACCAGAGTTTCCTCCAATTGATGTTTTACCCAATGCAGATATTCTTTGCAGGGATAACATCGACGTCAAAGATGAACTTCTACAAGGGAATGGCCTTTCCTGGGTTTTGGATCCTGATGTGCAGGTAGCTGAAAGGGAGCTTCAATCTGATAAAAATAAAAAGCTGAATCCGGAGGTAATGGATGGAAATCAAAGGGAAAAAATTGTCCAATCCCCTGTAATTCTGGCCTCTAAAATTGAAGCGGAACTGTACAAATTATATGGGGGTGTGAATAAAAAATACAAAGAGAAAGGAAGGTCCCTTTTGTTCAATTTAAAAGATCGAAGTAACCCTGAACTAAGGGAGAGGGTTATGTTAGGTGATATTCTTCCAGAAAGATTGTGCTCAATGTCTGCAGAGGAACTTGCTTCTAAGGAGCTTTCCCAGTGGCGAATGGCTAAGGCAGAGGAGCTTGCTCAAATGGTTGTGCTACCCGACTCAGAAGTTGATATTAGGCGTTTGGTGAGAAAGACCCATAAAGGAGAATTTCAAGTTGAAATTGAACAGGATAGTTTTACTGAGCTCCCATCTGCTGTAAGTTTATTTGCTCAGAGTCCGTCAAACGACAATAATGCAGAACGCTCTTCTTCCACTATTTCAGCTCATGTTACTGATGAGGAAAAGGACGAAGAAGCCAATGATCATCCATGTACCTTCACAATTCCATCAATTGAGGGTTCTGACTTGCTGCAAGGGCTCATGGTTGATGATACATTGAAGGATGCTGAATCACTTCCTCCAATTGTCTCGTTGGATGAGTTCATGGAGTCCCTCAATGCAGAGCCCCCTTTTGAAAATTTGCCAGAGGATACTGGGAAATTGAAGCCAATATTGAGTGAGCATGACCCTAAGGCTTGTTCTGAGACAAATGTTTCTGCTCCAATGACAGAAGATTTCACTCAGAATATACCAGAAGAACATAATGAACATAGTGATGGTACTGCTCCTGATCTTCAAGCAGACGTAAGACTTAGTGGTAATCATGCTAGTCCTCACCTCGATGTTGGTGGTTTCAATACCAAAAACAATGATGCCATTCAGAAATCTAGTGAAGGACTGAAAAAGTCCGGAATTTTGTCTATTGATAGCCCATCCAACGCAGACATTGTGTGGAATGGATCACTTCAACTTAATGTATCTTCTATGACCTCAACTATAGGAATTTTTCTAAGTGGCGAAAAAGTATCAGCAAAAGATTGGCCTCTTGTTCTTGACATCAAGGGTAGAGTCAGACTAGATGCATTCGAGAAGTTCCTCTTGAACCTCCCATTGTCCAGAAGCCGTGCTGTCATGGTTGTTCATTTTGATTTGAAGGAAGGGTGTCCAGAAAATGAGCGATCTAGTCTTCGTGAGGTTGCCGATTCCTACGTTTTGGACGAGCGAGTAGGTTTTGCCGAACCTGTTTCAGGGGTGGAATTATATTTGTGCCCACTCCACAAAAAAACACTTGAAATGATAAGCAAGATCATGTCGAAGGAACATGCTGTCGCTCTTAATGCTATTGATAATGGCTTAATTGGTGTTGTTGTATGGAGAAAAAAAGTAAATTCAACTTCTACAATTTCTCCCAACTCGAACTCATTCCACAAACACAGTAGCAGAAAACATTTTTCGTCTCGTAGACAGCACGACATGAACCTAATTGCCAATAATATAGCACCCCAACAGCCCCCTTTACGGGGCTTGTCAATGACCAGTTCTAAATCCCAAGACGAAATGGATGATGATGTCCCTCCCGGGTTTGGTCCCGCGGATAGCCGAGACGAAGATGACCTTCCTGAATTTAATTTCTCTGCTCCAAACTCTATTCAGGGCCCTGTGAAGTCTCGTTTTCTCCCCCATTCTCAACAAATTCCCCATCCGATGGAGGAAATGAGAAAGCTTATACACAAGTATGGACAGACAAATGCCAACCAGGAAAACAGAAAGGAGGAAGAAGACGACATCCCAGAGTGGAATCCCGGCCAGGAACCTCCTGAGCGGAGGTTGCCATCGCCATACTTCCAAGTTCCCATGAATGTTTTTGCCCCGTCTCACCAAGATTTATGGCACATCCCAGCTAGAAAGGCTTATAAATTTGCCATGTAA 3099 41.66 MSNNHVPQQFAIPSIEIGHLQPSSNNMELPLSELHGSFGSLLYDPSFSQYSLASKPMEVMASVSGTPMSQSLLVSHMQISQIDSKPTNLVSQKIQGSNYQFGMVNNMIGMDASKKFSLPAKRKSPLESIPHSLASLQPSFPNKRPEKFGHIPWLQNVTGINKTVLEMQSTVPTPHISPGTSKKVAIEALSVKSGPQRSTIKTQSTMVLPKIRTESFELVRSKMKESLAAALGLASQQVDRSLETGKSFRNDGERIVSLMEECSQPIGPVCTVPDVVNNVVEVRGGNLSVKEDVSACQGKKICDKSYNLFENSDKGNTHTLIPGAPEFPPIDVLPNADILCRDNIDVKDELLQGNGLSWVLDPDVQVAERELQSDKNKKLNPEVMDGNQREKIVQSPVILASKIEAELYKLYGGVNKKYKEKGRSLLFNLKDRSNPELRERVMLGDILPERLCSMSAEELASKELSQWRMAKAEELAQMVVLPDSEVDIRRLVRKTHKGEFQVEIEQDSFTELPSAVSLFAQSPSNDNNAERSSSTISAHVTDEEKDEEANDHPCTFTIPSIEGSDLLQGLMVDDTLKDAESLPPIVSLDEFMESLNAEPPFENLPEDTGKLKPILSEHDPKACSETNVSAPMTEDFTQNIPEEHNEHSDGTAPDLQADVRLSGNHASPHLDVGGFNTKNNDAIQKSSEGLKKSGILSIDSPSNADIVWNGSLQLNVSSMTSTIGIFLSGEKVSAKDWPLVLDIKGRVRLDAFEKFLLNLPLSRSRAVMVVHFDLKEGCPENERSSLREVADSYVLDERVGFAEPVSGVELYLCPLHKKTLEMISKIMSKEHAVALNAIDNGLIGVVVWRKKVNSTSTISPNSNSFHKHSSRKHFSSRRQHDMNLIANNIAPQQPPLRGLSMTSSKSQDEMDDDVPPGFGPADSRDEDDLPEFNFSAPNSIQGPVKSRFLPHSQQIPHPMEEMRKLIHKYGQTNANQENRKEEEDDIPEWNPGQEPPERRLPSPYFQVPMNVFAPSHQDLWHIPARKAYKFAM 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78003619 78008358 - Bma002993.1 Bma01g02151 76668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02151 1032 ProSiteProfiles TFIIS central domain profile. 372 487 IPR003618 GO:0006351
Bma01g02151 1032 MobiDBLite consensus disorder prediction 520 552 - -
Bma01g02151 1032 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 75 1013 - -
Bma01g02151 1032 Pfam Transcription factor S-II (TFIIS), central domain 380 475 IPR003618 GO:0006351
Bma01g02151 1032 MobiDBLite consensus disorder prediction 906 931 - -
Bma01g02151 1032 Coils Coil 959 979 - -
Bma01g02151 1032 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 75 1013 - -
Bma01g02151 1032 Gene3D - 372 462 IPR036575 GO:0006351
Bma01g02151 1032 SMART mid_6 369 470 IPR003618 GO:0006351
Bma01g02151 1032 MobiDBLite consensus disorder prediction 856 932 - -
Bma01g02151 1032 SUPERFAMILY Elongation factor TFIIS domain 2 392 463 IPR036575 GO:0006351
Bma01g02151 1032 MobiDBLite consensus disorder prediction 520 536 - -
Bma01g02151 1032 MobiDBLite consensus disorder prediction 880 905 - -
Bma01g02151 1032 MobiDBLite consensus disorder prediction 973 1002 - -
Bma01g02151 1032 Pfam SPOC domain 701 848 IPR012921 -
Bma01g02151 1032 MobiDBLite consensus disorder prediction 537 552 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02151 - - - qsu:111982988 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02151 Bma-Chr1:78003619 Bma08g01052 Bma-Chr8:49637437 5.56E-11 dispersed
Bma01g02151 Bma-Chr1:78003619 Bma02g00042 Bma-Chr2:396786 1.65E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42