Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02161 ATGGGGGGTCTAGGAAGGAATGTGATTGTCGCCAATACATTTGGGTCATTTGCTTTGCTAGCATTTCTAGTTTTAGGAGGATTTGTGTTAGCTCGAGATGATATTAAAAGCTGGTGGATATGGGGATATTGGATCTCTCCTATGATGTATGCACAGAATGCAATCGCTGTTAATGAATTTCTTGGAGAGAGCTGGAGTCATGTTCCTCCTAATGAAACAGAATCATTAGGTGTTCTAGTCTTGAAATCTAGAGGAGTTTTTCCCCAAGCTCAGTGGTATTGGATTGGAGTAGGAGCTTCAATTGGATTTATATTTCTATTCAATATCCTTTTTGCTTTGGCCTTAAAATACCTCGACCCTTTTGGCAAGCCTCAAGCAGTGTTGTCCAAAGAAGCCTTGGCTGAGAAAAATAGAAACAGAGGTGGAGACTTGGAACTATCATCAAAAGGGAAACATTTGTCTGAAAGAGGGAGCGATGGTCGTCGGAGTATATCATCTAGGACTTTGTCTTCCAGAGTGGGAAGCATCAGAGAAGAAACTCAAAACAGCAAAAGAGGAATGGTTCTTCCATTTGAGCCCCATTCTATCACTTTTGATGAAATAAGATACGCTGTGGACATGCCTCAGGAAATGAAAGCGCAAGGCATTCTTGAGGATCAGCTCGAACTGTTAAAGGGCGTGAATGGCGCATTTAGGCCAGGAGTTCTCACAGCTCTAATGGGTGTGAGTGGGGCTGGTAAAACAACGCTTTTGGATGTACTGGCTGGAAGGAAAACTGGTGGATACATAGAGGGAACCATCCACATATCTGGCTACCCAAAGAAACAACAAACATTCAATAGAATTTCAGGATATTGCGAGCAAACAGATATTCACTCCCCTCACGTGACAATCTACGAGTCGTTGCTTTATTCTGCATGGCTCCGGCTACCTCCAGAGGTTGATTCTGATACTAAAAAGATGTTTATCGAGGAAGTCATGGAGCTCGTGGAACTTACATCGTTGCGAGATGCTATTGTCGGACTGCCTGGTGTTAATGGTCTCTCAACTGAGCAGCGCAAAAGGCTGACTATAGCAGTTGAGCTTGTTGCAAACCCATCAATAATATTCATGGACGAGCCAACCTCTGGCCTTGATGCCAGAGCAGCAGCTATAGTGATGAGAACGGTAAGAAACACAGTAGACACTGGCAGAACCGTGGTGTGCACCATCCACCAACCAAGCATTGATATATTTGATGCTTTTGATGAGCTGTTTCTATTAAAACGTGGTGGAGAAGAAGTGTATGTCGGTCCTTTAGGCCGCCATTCGTCCCTTTTGATCGAGTACTTTGAGGGAATCAATGGAGTACCTAAGATTAAAGATGGCTACAATCCTGCTACTTGGATGTTAGAGATTACTTCGGCGGGTCAAGAAGCATCTCTTGGTGTGAACTTCACAGAAATATACAAGAACTCAGAACTATTTAGGAGAAACAAGGCTCTGATAAAGGAACTCAGCCAACCTACACCAAATTCAAAGGACTTGTACTATCCAACTCAGTACTCTCAGTCTTTCTTTACGCAATGCTTAGCTTGTCTATGGAAACAGCATCATTCGTACTGGAGAAACCCACCATACGCGGCTGTGCGATTTTTGTTCACAACTTTCATAGCTATAATGTTTGGGACAATATTCTGGGATTTTGGATCGAAGAGGAAAACTCCACAAGATCTGTTTAATGCAATGGGATCTATGTATGCTGCTGTTTTGTTCATTGGAATACAGAATACAACCTCTGTTCAGCCTGTTGTGGCCATTGAAAGAACCGTTTTTAACAGAGAAAGAGCGGCTGGAATGTACTCAGCGCTGCCATATGCGTTTGGACAGGTGGCAATTGAATTGCCTTACATCTTCATACAGACTGTCATATATGGAATAATCGTGTACGCCATGATTGGGTTTGAATGGACGGCGGCCAAGTTCTTCTGGTATATCTTCGTCATGTACTTCACCTTCCTATACTTCACCTTCTACGGGATGATGACTGTAGCTGTTACTCCCAACCACAACATCGCCGCCATCGTTTCCTCTGCTTTCTACGCCATTTGGAACCTGTTCTCCGGCTTCATCGTTCCAAGAACAAGAATGCCTATTTGGTGGAGATGGTACTTCTGGATTTGCCCTATTTCATGGACGCTGTATGGGTTGGTGGCTTCCCAATTCGGCGATGTGAAAGAGAGTATTCGTTTAGACTCAGGCTTAGAGGAAAGCGTTGAAGATTTTGTTAGGAATTATTTCGGGTATAGGCACGACTTTTTGGGCGTAGTGGCTCTTGTGCTGGTTGGGTTTACTGTCGTCTTTGGTTTTACATTTGCCTTCGCTATCAGGACCTTTAATTTCCAAAAGAGATGA 2394 43.53 MGGLGRNVIVANTFGSFALLAFLVLGGFVLARDDIKSWWIWGYWISPMMYAQNAIAVNEFLGESWSHVPPNETESLGVLVLKSRGVFPQAQWYWIGVGASIGFIFLFNILFALALKYLDPFGKPQAVLSKEALAEKNRNRGGDLELSSKGKHLSERGSDGRRSISSRTLSSRVGSIREETQNSKRGMVLPFEPHSITFDEIRYAVDMPQEMKAQGILEDQLELLKGVNGAFRPGVLTALMGVSGAGKTTLLDVLAGRKTGGYIEGTIHISGYPKKQQTFNRISGYCEQTDIHSPHVTIYESLLYSAWLRLPPEVDSDTKKMFIEEVMELVELTSLRDAIVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELFLLKRGGEEVYVGPLGRHSSLLIEYFEGINGVPKIKDGYNPATWMLEITSAGQEASLGVNFTEIYKNSELFRRNKALIKELSQPTPNSKDLYYPTQYSQSFFTQCLACLWKQHHSYWRNPPYAAVRFLFTTFIAIMFGTIFWDFGSKRKTPQDLFNAMGSMYAAVLFIGIQNTTSVQPVVAIERTVFNRERAAGMYSALPYAFGQVAIELPYIFIQTVIYGIIVYAMIGFEWTAAKFFWYIFVMYFTFLYFTFYGMMTVAVTPNHNIAAIVSSAFYAIWNLFSGFIVPRTRMPIWWRWYFWICPISWTLYGLVASQFGDVKESIRLDSGLEESVEDFVRNYFGYRHDFLGVVALVLVGFTVVFGFTFAFAIRTFNFQKR 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78451632 78455186 + Bma003006.1 Bma01g02161 76678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02161 797 Gene3D - 212 440 IPR027417 -
Bma01g02161 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 432 IPR027417 -
Bma01g02161 797 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 196 448 IPR003439 GO:0005524
Bma01g02161 797 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 4 797 - -
Bma01g02161 797 Pfam ABC transporter 224 376 IPR003439 GO:0005524
Bma01g02161 797 MobiDBLite consensus disorder prediction 139 162 - -
Bma01g02161 797 Pfam ABC-2 type transporter 405 466 IPR043926 GO:0140359
Bma01g02161 797 CDD ABCG_PDR_domain2 193 431 IPR034003 -
Bma01g02161 797 MobiDBLite consensus disorder prediction 139 177 - -
Bma01g02161 797 PANTHER ATP-BINDING CASSETTE TRANSPORTER 4 797 - -
Bma01g02161 797 SMART AAA_5 233 425 IPR003593 -
Bma01g02161 797 MobiDBLite consensus disorder prediction 163 177 - -
Bma01g02161 797 Pfam Plant PDR ABC transporter associated 65 127 IPR013581 -
Bma01g02161 797 Pfam ABC-2 type transporter 521 735 IPR013525 GO:0016020|GO:0140359
Bma01g02161 797 Pfam ABC-2 type transporter 2 60 IPR013525 GO:0016020|GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02161 K08711 PDR, CDR1; ATP-binding cassette, subfamily G (WHITE), member 2, PDR - jre:109001797 1337.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02161 Bma-Chr1:78451632 Bma10g00788 Bma-Chr10:12684692 0 dispersed
Bma01g02160 Bma-Chr1:78380446 Bma01g02161 Bma-Chr1:78451632 2.73E-07 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g365 . . . . . . . Bma01g02161 . . . Cma05g00437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000210 5 7 7 8 5 5 5 4 4 5 4 4 6 5 5 6 4 7 6 3 5 6 5 7 7 5 6 9 8 14 177