Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02162 ATGCCGTACCGGGAGTCCCGCCAATTACTCTCCCTAGTCCTCGCTCCCATTTCCAAACGGAACCCTAACCCTCGTCCTCTTAATTCCACCATTCACTTTTTCTCTTCTTCCGATCAGTCATGGCTTTCTGTTCCCGGCAATCCCATAATCAAATGGCCTCTTCCCCTACCAACCTTCCATCCTCCCTTATCAACTGCTCTTCCAGTTTTAATTCCTGAGCTTGATATTAGTTCCGATACGAAAACGAGTGATGAATTCTCCATTGTTGCCGGTCTTCTCACGGACCCCAAAATCTCTCCTGGTTCATCGCTTGAAAATGCTCTGGACCAGACAGGAATTGTACCGAGTCTTGCTCTGATGGAGGTAGTTTTTGATCATTTTGATTCCTCCCCCAGATTGTTGCATTCACTATTTCTCTGGGCCGAGAGGCAACATGGGTTTCGGCCATCTCCTACTCTTTTCAGCTCCATGATCAACGCCCTTGCAAAATCGAGAGAGTTCGACTCCGCATGGTCTCTCATTATTCATAGAGTACACAACGATGCGGAGCCTGCTTTGGTTACTGTTGATGTCTTTGCGATTTTGATCAGGCGATATGCTCGGGCAGGTATGCACCAGCCTGCTATTCGGGCTTTTGAATTTGCAAGCAATTTAACTGCTATCTGTAACTTGAAAACAGACAATTTGTTTGAGATCTTGTTGGATTCTTTTTGCAAGGAAGGGCATGTTAGGGTAGCTTCAGAGTACTTTGATAGGAAAGTGAGTTTGGATCCAAGTTGGCTTCCTTCAATACGAGTTTATAATATACTTTTGAATGGATGGTTTCGATCAAGGCAGCTCAAACATGCAGAACGACTATGGGTGGAGGTAAAGAAGAAGAATTTGAGACCAAGTGTAGTGACATATGGTACCCTTGTGGAAGGATATTGTAGAATGCGCCGTCCTGAAAGGGCAATTGAATTAGTGAATGAGATGAAGGGGGAAGGTCTTGAGCCAAATGCAATCATATACAACTCTATAGTTGATGCACTCGGGGAAGCTGGGCAGTTCAAAGATGCATTAGGCATGTTAGAACGGTTTTTGGTTCTAGAATCAGGCCCGACTATCTCAACGTACAATTCTCTTGTCAAGGGATTTTGTAAAGCAGGAGATCTCGTGGGTGCTAGCAAGATCCTTAAGATGATGATAAATAGGGGATTTTCGCCGATTCCATCAACATATAATTACTTTTTTAAGTATTTCTCAAAAGTTGGAAAAATTGAAGAGAGCATGAATCTTTACAATAAGTTGATTGAATCTGGCTATTCCCCTGATCGACTCACATACCATCTTTTGTTGAAAATGCTGTGTGAAGAGGAGAGACTAGAGTTGGCAGTTCAAGTTGCCAAGGAAATGAGAGCTAGGGGATATGATATGGACTTAGCTTCGAGCACCATGTTGATTCATTTACTTTGCAAGATGCATAAATTGGCAGAAGCGTTTGCAGAATTCAAGGACATGATTAGGAGAGGCTTGGTTCCTCAATATCTCACATTTCAGAGAATTACTGATGAATTGAATAATTGTGGGATGACTGATATGGCTTGTAAAGTGCGTGATATGATGTCATCGGTTCCCCACTCAACGAATTTACCTAATACATATGAAGGGGGTAGAGATTCATCTAGTTCAAGAAGAAATATAATGCGGAGAGCTCAAGCGTTTTCTGCTATATTAAAAGATTGTAATGATCCCCGGGAACTTGCTAGACATAGAAATTCATCCGAGAATGTTAAATCAAGCGCAAATAAGTTGATAGATGATATTAAGAAAAAAGCCAAAAAATTTGAATCCATGGATGCTGTAAATTTCATAAAGTGTGAATGA 1866 41.75 MPYRESRQLLSLVLAPISKRNPNPRPLNSTIHFFSSSDQSWLSVPGNPIIKWPLPLPTFHPPLSTALPVLIPELDISSDTKTSDEFSIVAGLLTDPKISPGSSLENALDQTGIVPSLALMEVVFDHFDSSPRLLHSLFLWAERQHGFRPSPTLFSSMINALAKSREFDSAWSLIIHRVHNDAEPALVTVDVFAILIRRYARAGMHQPAIRAFEFASNLTAICNLKTDNLFEILLDSFCKEGHVRVASEYFDRKVSLDPSWLPSIRVYNILLNGWFRSRQLKHAERLWVEVKKKNLRPSVVTYGTLVEGYCRMRRPERAIELVNEMKGEGLEPNAIIYNSIVDALGEAGQFKDALGMLERFLVLESGPTISTYNSLVKGFCKAGDLVGASKILKMMINRGFSPIPSTYNYFFKYFSKVGKIEESMNLYNKLIESGYSPDRLTYHLLLKMLCEEERLELAVQVAKEMRARGYDMDLASSTMLIHLLCKMHKLAEAFAEFKDMIRRGLVPQYLTFQRITDELNNCGMTDMACKVRDMMSSVPHSTNLPNTYEGGRDSSSSRRNIMRRAQAFSAILKDCNDPRELARHRNSSENVKSSANKLIDDIKKKAKKFESMDAVNFIKCE 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78457949 78460080 - Bma003007.1 Bma01g02162 76679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Bma01g02162 621 Gene3D Tetratricopeptide repeat domain 260 362 IPR011990 GO:0005515
Bma01g02162 621 Gene3D Tetratricopeptide repeat domain 467 538 IPR011990 GO:0005515
Bma01g02162 621 Gene3D Tetratricopeptide repeat domain 126 254 IPR011990 GO:0005515
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Bma01g02162 621 SUPERFAMILY HCP-like 241 445 - -
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Bma01g02162 621 Pfam PPR repeat family 367 414 IPR002885 -
Bma01g02162 621 Pfam Pentatricopeptide repeat domain 287 346 IPR002885 -
Bma01g02162 621 Gene3D Tetratricopeptide repeat domain 363 466 IPR011990 GO:0005515
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Bma01g02162 621 Pfam PPR repeat 478 505 IPR002885 -
Bma01g02162 621 Pfam PPR repeat 154 174 IPR002885 -
Bma01g02162 621 Pfam PPR repeat 232 252 IPR002885 -
Bma01g02162 621 Pfam PPR repeat 441 469 IPR002885 -
Bma01g02162 621 PANTHER LEAF PROTEIN-LIKE 97 606 - -
Bma01g02162 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 336 360 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 266 298 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 371 402 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 441 473 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Bma01g02162 621 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Bma01g02162 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 97 606 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02162 - - - pper:18792309 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02162 Bma-Chr1:78457949 Bma02g00206 Bma-Chr2:2240165 7.78E-29 dispersed
Bma01g02153 Bma-Chr1:78072429 Bma01g02162 Bma-Chr1:78457949 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g315 . . . . . . . Bma01g02162 . . . Cma05g00464 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01314 Cam08g1774 Cec08g1356 Cco08g1476 Clacu08g1470 . Cre08g1257 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60