Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02174 ATGTCGGACGAGGAGCATCACTTCGAGTCCAAGGCCGATGCAGGTGCCTCCAAAACTTATCCTCAGCAGGCTGGAACAATCCGCAAGAACGGTTACATAGTTATCAAGGGCCGTCCCTGCAAGGTTGTAGAGGTTTCTACTTCCAAGACAGGGAAGCATGGACATGCAAAGTGCCACTTTGTGGCTATTGATATATTTACTTCTAAGAAACTCGAGGATATTGTCCCATCATCCCACAACTCTGATGTTCCACATGTTACTCGTACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACCGATTCAGGTAGCACAAAAGATGACTTGAGGCTTCCTACTGATGAGAGCCTGCTTAGTCAGATTAAGGATGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCGATGGGAGAAGAACAAATCTGTGCCCTCAAGGATATTGGCCCCAAAAAC 480 45.83 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNSDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDESLLSQIKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78661310 78663808 + Bma030284 Bma01g02174 76691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02174 160 CDD S1_eIF5A 86 156 - -
Bma01g02174 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g02174 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Bma01g02174 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g02174 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g02174 160 MobiDBLite consensus disorder prediction 1 21 - -
Bma01g02174 160 Gene3D - 86 159 IPR012340 -
Bma01g02174 160 Gene3D - 1 85 IPR014722 -
Bma01g02174 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bma01g02174 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bma01g02174 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Bma01g02174 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Bma01g02174 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02174 Bma01g01263 CCT
Bma01g02174 Bma04g00091 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02174 Bma-Chr1:78661310 Bma14g01659 Bma-Chr14:35180006 2.47E-111 dispersed
Bma01g01263 Bma-Chr1:17081543 Bma01g02174 Bma-Chr1:78661310 1.70E-99 wgd
Bma01g02174 Bma-Chr1:78661310 Bma04g00091 Bma-Chr4:759090 1.87E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02174 K03263 K02180 mnt:21396395 310.071