Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02182 ATGCTCATCTCTCTCTTCTCTATCTGTCTAATCCTTTCATCCATTGCTATTTCTTCTTCCCTTCTTTGCTTTCCTTCCTGTAGGTTAATTTTTTGGGATCTACTCCATTTCTGTAAGAAGATTATTTTTTTCGCGTCTTCAGCCGTAGCTACCGAATATTATATATTTCTTATCCTTATTTTGATCGGAGGAAGTAGAACTGGCCAATTAGTAATAACCACTAACATGGGCTATCTGAATTCAGTCCTATCATGTTCGAGTCAGGTTCATTCTGCCGATGAAGGACCAGTAAGCGGCGGTGGTCTCAGTTCAAATGGAAAGTTCAGCTATGGATATGCAAGTTCTCCAGGGAAACGGTCTTCAATGGAAGATTTTTATGAGACACGAATAGATGGTGTTGAAGGGGAAATAGTAGGCCTCTTTGGGGTTTTTGATGGTCATGGGGGTGCGCGGGCTGCTGAGTATGTGAAGCAAAACTTGTTTAGTAATTTGATCCAGCACCCTAAGTTCATTTCCGATACTAAATCAGCTATAGCCGATGCATACATCCACACAGACTCAGAATTTCTAAAATCAGAAAACAATCAGAACAGGGATGCTGGATCAACAGCTTCTACTGCTATTTTAGTCGGTGATCGTTTGCTTGTTGCTAATGTTGGGGATTCCAGAGCTGTTATATGTCGTGGTGGAAATGCAATTGCTGTCTCCCGAGATCACAAACCTGATCAATCAGATGAACGACAACGGATTGAGGATGCTGGAGGATTCGTGGTGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCACGTGCTTTTGGGGATAGGCTGTTGAAGCAATATGTTGTAGCTGATCCGGAAATTCAGGAGGAAAAGATCGATAGCTCCCTTGAGTTTCTCATTCTTGCAAGTGATGGACTGTGGGATGTTGTATCTAACGAGGAGGCTGTTGCGATGATAAAACCAATTCAGGCACCGGAGGAGGCCGCAAAGAGGTTGATGCAGGAAGCATACCAGAAAGGCAGTGCTGATAACATTACCTGTGTGGTGGTTCGTTTTTTGGCCAATCAAGGCGCTTCCTCCTGCCAAACGTCTGCGTAA 1107 43.9 MLISLFSICLILSSIAISSSLLCFPSCRLIFWDLLHFCKKIIFFASSAVATEYYIFLILILIGGSRTGQLVITTNMGYLNSVLSCSSQVHSADEGPVSGGGLSSNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIQHPKFISDTKSAIADAYIHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQSDERQRIEDAGGFVVWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKIDSSLEFLILASDGLWDVVSNEEAVAMIKPIQAPEEAAKRLMQEAYQKGSADNITCVVVRFLANQGASSCQTSA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78713791 78718235 + Bma003028.1 Bma01g02182 76699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02182 368 Gene3D - 101 360 IPR036457 -
Bma01g02182 368 PANTHER ALPHABET, ISOFORM E-RELATED 78 363 - -
Bma01g02182 368 SUPERFAMILY PP2C-like 104 355 IPR036457 -
Bma01g02182 368 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 78 363 - -
Bma01g02182 368 SMART PP2C_SIG_2 120 355 IPR001932 -
Bma01g02182 368 ProSiteProfiles PPM-type phosphatase domain profile. 109 355 IPR001932 -
Bma01g02182 368 CDD PP2Cc 108 355 IPR001932 -
Bma01g02182 368 Pfam Protein phosphatase 2C 138 348 IPR001932 -
Bma01g02182 368 SMART PP2C_4 99 353 IPR001932 -
Bma01g02182 368 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02182 Bma04g00107 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00627 Bma-Chr1:5679783 Bma01g02182 Bma-Chr1:78713791 3.70E-25 dispersed
Bma01g02182 Bma-Chr1:78713791 Bma11g00807 Bma-Chr11:24502658 1.06E-71 dispersed
Bma04g00794 Bma-Chr4:9035602 Bma01g02182 Bma-Chr1:78713791 2.29E-20 dispersed
Bma14g01907 Bma-Chr14:40766803 Bma01g02182 Bma-Chr1:78713791 1.05E-29 dispersed
Bma02g00324 Bma-Chr2:4405883 Bma01g02182 Bma-Chr1:78713791 5.07E-51 transposed
Bma03g00241 Bma-Chr3:1838588 Bma01g02182 Bma-Chr1:78713791 6.90E-33 transposed
Bma09g00623 Bma-Chr9:43564674 Bma01g02182 Bma-Chr1:78713791 1.84E-27 transposed
Bma14g01999 Bma-Chr14:43298404 Bma01g02182 Bma-Chr1:78713791 3.83E-106 transposed
Bma01g02182 Bma-Chr1:78713791 Bma04g00107 Bma-Chr4:839888 3.33E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02182 K17506 - gmx:547661 542.732