Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02184 ATGGTTTGCGAGTTGGAGAGCGACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTGTCTAATGTCGGTAAGCAATTCAATGTAGAAAGGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTGGATTTCAAACGCCTTTTGGAGTTGACCAACTACACCGAGAAAGGGTCTTTGCAATTGCAATATCTTGCGAAACAATGGGAATATAAGCAGGCAAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAACAAACAAAGGCAGGAATTTGAGCTCAAGGAATTGAAGATAGTAGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATTTTGGAAGAAGTTTATGACTTATGGCAAGATGTTCCTCAAAGAAAAAATGATTTTGTTTTTCAAAATAAAAGAGTTGAAATAGAGCCAGAGTATGATACCATAACATATTGGAAGCAGAAGGCAGTGAAGTTGGAGAAGTTATTAGAAGCTAGTTTACAGCGAGAGCATATTTTAACAGAGAAGCTCCAGGAAAGCATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCTCCCGTTGTTATTGGTACATCAGAATTGCGATATCGTTTTATCTATAATCATTTTCCAAGTTTGGATGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTGGAAAGAAGAATACCTGCAAAGAGGGAAATTACTTTTGACACTCCATTATTTGGGTTAAAGACATTCTTGATATACGTGGAACCTGTCTTCAGTAAGGCCGGGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTGCAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATTACAGGAGTTATGAAACTGGAAGCTACAAAATTCCGGCCTAGAGAGGTTGTGAAGCATGTCCTCCAGACTGCAGCTGCGTCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGACGTTCCTGTAGAGGTCAGATACATATTTCATCACATTTTAATAATTGTATTATTATTACAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACGAACTTGATAAGCAATGCAATCAAGTTTACTCATCAAGGAAAGGTTGGAATTAAGATTTATGTGGTACCAGATCAACTTTCTGGGAAAGAAGAAGAATGTCATCAGAGGTTTAATGCTCAACATTCCACAGTTTTATCAACCGAATCGGAAGAAGAGAAATGTCCGTCAGTACCTCAGAATAGCTCAGATAGAAAAAAATATTTCCAAAAACAAGGGGATAGTCCTCAACAAAATCATTCGTTTTGCCCTGATATTAGAAGCACTGGTAACTGTGAACCTTTGGTGAATGGAAAAAGGGAAGAACATCACCAGGCACCCGAAACAACTGTGTGGATTCGCTGTGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTTTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATATGCAAACAACTGCAGGTTGAGCTGATCGGTGGTCGCTTGACAGTGTCTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCAACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGCAGATGTGACAAATTACGATGTGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCAACCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGATGTAGCAGAACTCAAAAGTTGTCGCATAACAACGGGTATGCAACGTCAAAAGAAAATGGATTACGATGGAGTTCTAATTCATTTCTCTCTAACGCAAGATCAAAAGAGATGCCTTTTCTTGAGGATGCCTGTTCAGTAGCTGATTCTACAACATTAGAGGAATCAAAAACTACACAAAATCATAATGAGAATTCACTGTGTGGAGTGAGCCACTGTCAAGATAAGACAAATGGTCAATCCCTGAATGATTGTAATGATTCACCTCATAGCATGGGAAAAGAAAGAGAAGAGTTCATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAAGTGGAAGGAGAAATCTGATCCCAGATTTCATTGCGTGAACAATGTCACTTCAGAAGTATCTCAATCAGCATTGAAACCTAGAATCCTTCTTGTGGAGGACAACAAGACCAATATAATGGTAACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAGTGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATTATGGATGGGCTCCAAGCTACAAGATTAATTCGTTCTTTCGAAGAAACAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATCGAACCTGTGCATGGCCAGACTGTATCCAGCGGCAAGCGTATTCCCATAGTGGCTATGACAGCGAATGCGTTGGCTGAAAGTGCGGGGGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTAAAACAGTGCCTTGAACAATACTTAACGTGA 2847 40.29 MVCELESDIMEDMDIEDLPSMWPEDVVSNVGKQFNVERPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSLQLQYLAKQWEYKQANAVRLLKEELDIMNKQRQEFELKELKIVEEHLFEEERYGDYKRPISILEEVYDLWQDVPQRKNDFVFQNKRVEIEPEYDTITYWKQKAVKLEKLLEASLQREHILTEKLQESIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGTSELRYRFIYNHFPSLDEEDIIGKTDVEIFHGAGVKESQDFKREVLERRIPAKREITFDTPLFGLKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITGVMKLEATKFRPREVVKHVLQTAAASLQKCLLLEGHVADDVPVEVRYIFHHILIIVLLLQVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQLSGKEEECHQRFNAQHSTVLSTESEEEKCPSVPQNSSDRKKYFQKQGDSPQQNHSFCPDIRSTGNCEPLVNGKREEHHQAPETTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQLQVELIGGRLTVSSQEHRGSTFTFVLPYKLSTAADATDDSDEIADVTNYDVANSDSSEGFFQFQPGSFGSLTSSNGCSRTQKLSHNNGYATSKENGLRWSSNSFLSNARSKEMPFLEDACSVADSTTLEESKTTQNHNENSLCGVSHCQDKTNGQSLNDCNDSPHSMGKEREEFISKGTFEPQVNSKWKEKSDPRFHCVNNVTSEVSQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEETGNWDAAEKAGIEPVHGQTVSSGKRIPIVAMTANALAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78756518 78762759 - Bma003031.1 Bma01g02184 76701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02184 948 Gene3D - 802 948 - -
Bma01g02184 948 Gene3D PAS domain 213 346 - -
Bma01g02184 948 ProSiteProfiles Response regulatory domain profile. 809 947 IPR001789 GO:0000160
Bma01g02184 948 Gene3D - 364 628 IPR036890 -
Bma01g02184 948 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 364 - -
Bma01g02184 948 Pfam Response regulator receiver domain 810 877 IPR001789 GO:0000160
Bma01g02184 948 CDD HATPase_EvgS-ArcB-TorS-like 432 622 - -
Bma01g02184 948 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 364 - -
Bma01g02184 948 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 364 947 - -
Bma01g02184 948 Coils Coil 188 208 - -
Bma01g02184 948 CDD REC_hyHK_CKI1_RcsC-like 810 943 - -
Bma01g02184 948 Coils Coil 340 360 - -
Bma01g02184 948 SUPERFAMILY CheY-like 808 947 IPR011006 -
Bma01g02184 948 MobiDBLite consensus disorder prediction 479 520 - -
Bma01g02184 948 PRINTS Bacterial sensor protein C-terminal signature 609 622 IPR004358 GO:0016310|GO:0016772
Bma01g02184 948 PRINTS Bacterial sensor protein C-terminal signature 549 563 IPR004358 GO:0016310|GO:0016772
Bma01g02184 948 PRINTS Bacterial sensor protein C-terminal signature 584 602 IPR004358 GO:0016310|GO:0016772
Bma01g02184 948 ProSiteProfiles Histidine kinase domain profile. 425 625 IPR005467 -
Bma01g02184 948 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 364 947 - -
Bma01g02184 948 SMART HKATPase_4 427 625 IPR003594 -
Bma01g02184 948 Coils Coil 92 112 - -
Bma01g02184 948 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 427 623 IPR003594 -
Bma01g02184 948 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 419 622 IPR036890 -
Bma01g02184 948 SMART REC_2 808 943 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02184 - - - tcc:18587650 1067.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02184 Bma-Chr1:78756518 Bma14g01923 Bma-Chr14:41020093 1.02E-15 dispersed
Bma01g02184 Bma-Chr1:78756518 Bma04g00854 Bma-Chr4:10775691 1.11E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56772 PF02518 HATPase_c 5.20E-26 CL0025 Bma TR