Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02189 ATGCCGATCGTCGACGGGAATATGACCGCGCTTGATCGCCGGATTCTGACGACTGTAAACACTGGAGCGTCCAGTCTCTCATTCGTGGGGTCAGGATTTATAGTACTTTGCTACGTCCTTTTCAAAGAGCTCCGCAAGTTCTCCTTCAAGCTCGTCTTCTATCTTGCCCTCTCAGTACGCATCTCTTTCTTGTCTTCTTGTTGCAGAGACCCATCTGAAGGATTTTTCTGTTCTGCCCAGGGGTACAGCACACACTTCTTTTGCGTGGCCTCTTTCCTGTGGACTACTGTAATTGCTTTTACTCTTCATCGAACAGTTGTAAGACACAAAACTGACGTTGAAGATCTGGAGGCTATGTTTCACTTGTATGTTTGGGGAGTATCATCAGTAATGACTGTCATGCGCTCCATTGGTAACGACCACAAACATTTTGGTGTCTGGTGTTGGACACAAACAGGGCGCAAAGGAAAGGCAAATGTACTTTTTTTCGCTGACATCCGTCTACTCTTCCAGGTGGTTCACTTTATTACATTTTATATGCCACTCTGGGGTGCAATTCTTTACAATGGTTTCACGTACATTCAAGTGATCCGCATGCTAAACAATGCCACTCGAATGGCAGTGGGTATATCAGACAGGTCTCATCAATCAGACACGAGAGCTGACATGAGGGCCTTGAACCGGTGGGGATACTATCCGCTAATTCTTATAGGATCGTGGGCTTTTGGAACGATCAACCGCATTCATGATTTCATTGAACCAGGACATAAAATCTTTTGGCTTACAGTTCTCGATGTTGGAATGGCTGCACTTATGGGTCTATTTAATTCAATAGCGTATGGCCTCAATTCTTCTGTGAGACGGGTAATTCATGAAAGACTGGAACTTTTCTGGCCAGAACTGCTTCGAAGATGGCTCCCAAACAGTTCGAGGGCCAGAAACCAACAACAAGAGAGTGAACTCGTTTCATTGAAAATTCAAGACCAGCAATAG 993 45.02 MPIVDGNMTALDRRILTTVNTGASSLSFVGSGFIVLCYVLFKELRKFSFKLVFYLALSVRISFLSSCCRDPSEGFFCSAQGYSTHFFCVASFLWTTVIAFTLHRTVVRHKTDVEDLEAMFHLYVWGVSSVMTVMRSIGNDHKHFGVWCWTQTGRKGKANVLFFADIRLLFQVVHFITFYMPLWGAILYNGFTYIQVIRMLNNATRMAVGISDRSHQSDTRADMRALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLTVLDVGMAALMGLFNSIAYGLNSSVRRVIHERLELFWPELLRRWLPNSSRARNQQQESELVSLKIQDQQ 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78789301 78792398 - Bma003036.1 Bma01g02189 76706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02189 330 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 16 284 IPR017981 GO:0004888|GO:0007166|GO:0016021
Bma01g02189 330 Pfam Slime mold cyclic AMP receptor 23 284 - -
Bma01g02189 330 Gene3D - 9 315 - -
Bma01g02189 330 PANTHER TRANSMEMBRANE PROTEIN 116 9 325 - -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 16 31 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 33 47 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 94 112 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 117 132 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 49 71 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 226 247 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 274 290 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 256 273 IPR022340 -
Bma01g02189 330 PRINTS Putative plant GPCR, GCR1, signature 79 92 IPR022340 -
Bma01g02189 330 PANTHER G PROTEIN-COUPLED RECEPTOR 157-RELATED 9 325 - -
Bma01g02189 330 PRINTS GCR1-cAMP receptor family signature 27 45 IPR022343 -
Bma01g02189 330 PRINTS GCR1-cAMP receptor family signature 232 250 IPR022343 -
Bma01g02189 330 PRINTS GCR1-cAMP receptor family signature 46 61 IPR022343 -
Bma01g02189 330 PRINTS GCR1-cAMP receptor family signature 77 95 IPR022343 -
Bma01g02189 330 PRINTS GCR1-cAMP receptor family signature 264 283 IPR022343 -
Bma01g02189 330 SUPERFAMILY Family A G protein-coupled receptor-like 13 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02189 K22987 GCR1, CRLA; cAMP receptor-like G-protein coupled receptor - cit:102610639 531.176
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g174 Blo01g01438 . Bda01g00644 . . Bpe02g00515 . Bma01g02189 . . Cma01g01606 . Car09g00321 . . . Cpe06g00265 . . . . . . . Cla05g01637 Cam05g1746 Cec05g1756 Cco05g1812 Clacu05g1738 Cmu05g1623 Cre05g1750 Cone4ag1705 Cone7ag1621 . . Lsi04g01377 . . . . . . . . . . . Sed13g1922 Cmo01g01688 Cmo09g00373 Cma09g00372 . Car01g01310 . . Cpe02g00297 Bhi09g03068 Tan01g3494 Cmetu07g1418 . . . . . . . . . . . . . . Cme07g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004383 1 3 1 1 1 1 3 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 6 1 42