Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02192 ATGGCGGCTACTTTGGTCCGTCTCTCCATTTCCTCTCCCCCCAAGCTATCCTTCTTTGAGTGCTCCGCAGACAACGGCCGCCTCTTTGACTTCCGGCATTGCTTGCCCAATCGGAAACTTCGTCACCGCCCTTTCTCCGTCCCTCGACAGCACCACTGTTATCGGCGACTGAACAAGCCTACTGTCCGCATTTCTAACGCCCTTGAGGTTCGACCTTCGACGCAAAATGCAGCGTTTCAACCAGAACGGCCGGAAGAGCTGTCGGTCCTCCTCGACGTTTCGGGAATGATGTGCGGTGCTTGTGTTTCTCGAGTCAAATCCGTTCTTTCTTCCGACGATCGGGTTGATTCTGTGGTAGTCAACATGTTGACCGAGACGGCGGCAATTCGTTTGAAGCCGCAGATGGTCGCGGATTCGGCCACGGAAGTGGCAGGAAGACTTGCTCGAAAATTGACGGAGTGTGGCTTCCCGACGAATCAGAGGGTTTCCGGGATGGGAGTATCGGATAATGTGAAGAAGTGGAAAGAGATGGTGAAGAAGAAGGAGAGTATGCTCGACGAGAGCGGGAATCGGGTGGCTTTTGCTTGGACTTTGGTAGCATTATGTTGTGCTTCGCATGCTTCACACATATTGCATTCTCTTGGTATTCACATTGCACATGGATCATCGTGGGATATACTTCAAAACTCGTATCTAAAGGGCAGCTTGGCTTTGGGAGCTCTGTTAGGACCGGGACGAGTGATATTTACTGCAGACTTGCTGTTTGATGGTATGAGGGCATTTAAGAAGGGATCGCCAAATATGAATTCGCTTGTAGGCTTTGGTGCTGCTGCTGCTTTTACGATCAGCATGGTCTCACTTCTTAACCCTGGGCTAGCATGGGATGCCTCCTTCTTTGATGAACCGCTTCTCATGGAAAAATCTTACTTTTTTAGTATGCAGGTCATGCTTCTTGGTTTTGTGCTCCTTGGACGTTCACTGGAGGAAAAGGCAAGGATCAGGGCATCTAGTGACATGAACGAACTTCTGTCATTATTATCCACTCGCTCACGACTTGTAATTGCCTCCCCAGAAAGTGATTCCTCCTCCGAGACTGTACTCTGCCACGATGCTATTTGCATCGGTGTTCAAACTGATGATATAAGAGTTGGAGATTCAATTTTGGTTTTACCGGGAGAGACCATACCTGTGGACGGAAAAGTTCTTGCAGGGAGAAGCGTAGTGGACGAATCCATGCTCACAGGGGAATCTCTACCTGTATTTAAGGACAAAGGCATTATGGTCTCTGCTGGAACAATAAATTGGGATGGTCCTTTGAGAATCGAAGCCTCTTCAACTGGCTCCAATTCAACTATATCGAAGATTATTCGCATGGTTGAGGATGCTCAAGGTCGTGAAGCACCAATTCAAAGACTTGCAGATTCTATAGCTGGACCGTTTGTGTACACTGTACTAACTCTCTCAGCAGCAACGTTTTCCTTTTGGTATGTGTACTACTTTGGGACCCATATTTTTCCAGATGTTTTGATGAATGATATTGCTGGACCAGATGGAGATCCATTACTTTTAAGCTTGAAACTTGCGGTGGATGTCTTGGTTGTTTCTTGCCCATGTGCACTTGGACTTGCCACTCCCACGGCTATCCTTGTTGGCACTTCCCTAGCAGGGGCAAGACAAGGACTTCTTATAAGAGGAGGAGATGTATTAGAGCGTTTGGCAGGCATTAATTGTGTTGCTCTTGACAAGACGGGGACTCTTACTGAAGGAAAACCATCTGTTTCTGCTGTTGCTTCCTATGCCTATGCGGAATCAGAGATTCTCAAAATTGCTGCTGCAGTGGAGAAGACTGCATCACATCCAATCGCAAAAGCCATAGTAGATAAAGCAGAGTTGTTGACTTTGACTTTTCCAATTACCAAAGGGCAAATAGTGGAACCTGGTTTTGGAACTTTGGCAGAAGTAGAAGGGAAATTGGTTGCAGTTGGTTCTTTAGAATGGGTGCATGAAAGGTTCCAAGAAAAGGCAACGCTTTCTGATCTTAAAAAACTAGATCATAGTGTGCATCAGTCATTCGAAGGATCGACCTTATCAAATAATTCGAAAACAGTTGTTTATGTTGGACGAGAAGGAGAAGGAATTATCGGTGCTATTGTGATTTGTGATAATTTGCGCCAGGACGCTGCATCTACTGTCACAAGCAATCTCTCAGGTTTAAACCTCGAAGGAGAAATTTCACCTGCAATTGGAAAACTTAGAAGCCTGATAACCATTGACTTGAGGGGAAATCGTCTTTCCGGGCAAATTCCCGACGAGATTGGCGACTCCTCTTCTTTGAGAAATCTGGACTTATCATACAATGAGATTTATGGAGATATACCATTTTCAATCTCAAAACTGAAGCAACTAGAAATGATAGTTTTGAAAAACAACCGCTTGACTGGACCGATTCCTTCTACTCTATCTCAAATTCCAAATTTGAAGATATTAGATCTTGCACAGAATAATCTCAGCGGCGAAATTCCGAGGCTTCTGTACTGGAATGAAGTTTTGCAATATCTTGGATTACGGGGAAACAATTTGGTCGGTGCTCTCTCTCCGGATATTTGCCAACTTACAGGATTGTGGTACTTTGATGTGAGAAACAACAGTTTGACTGGAAGCATTCCGCAAAGCATAGGGAATTGCACTGCCTTCCAGGTCTTAGACCTATCCTATAATCAGTTGACCGGAGAGATTCCGTTCAATATTGGTTTCCTACAAGTTGCCACTTTGTCACTACAAGCAAATCAACTTTCTGGCCAAATTCCAGCAGTCATCGGGTTGATGCAGGCCCTTGCAGTGTTAGATCTGAGCTGCAACAAGTTAAGTGGTTTGATTCCTCCTATCTTGGGAAACTTGACTTACACGGAGAAATTGTACTTGCATGGCAACATGCTTACTGGGTCCATTCCTTCAGAGCTTGGAAATATGACAAAGCTTCATTATCTGGAACTAAACGACAATCATCTGACGGGATGTATTCCGCCAGAACTCGGGAAGCTCATCAATTTGTTTGATATAAATGTGGCGAACAATAATCTCGAAGGACCTATACCAGACAATCTCAGTTCGTGCACAAATCTGAACAGTCTCTCAGAAACGGGACATGGAAATAAACTGAATGGTTCGATTCCGCCTGCTCTCCAAAGGCTGGAGAGCTTGACTTATCTAAATCTCTCGTCGAACAATCTTCGGGGCTCCATTCCAATCGAGCTGTCTCGGATTGGTAACTTGGACACTTTGGATTTATCGAGTAACGAAATTAGCGGGTCGATTCCTTCTTCCCTTGGCGATCTAGAACACCTCCTTAAGTTGAATTTAAGCGGAAATGAGTTAACGGGATTCATTCCTGCCGAGTTTGGTAACCTGAGAAGTGTTATGATGATAGATCTCTCCGAAAATCATCTCTCGGGCCCGATTCCTCAAGAATTTAGTCAGCTTCAGAATGTGTTGTCCTTGAGACTGGAAAGCAACAATCTATCTGGGGATGTGATGTCTCTAATTAACTGCCTGAGTCTAACAGAATTGAACGTATCTTATAATAACTTGGCTGGCGTTATTCCGACTAGCAATAACTTCTCGAGATTCCCGTCTGACAGTTTTGTTGGAAATCCGGGTCTTTGCGGATCTTGGCATAACTACCAATGCCATGAGTCTCGATCGATGGGAAGAGTCACAATATCGAAAGCGGCAATCATCGGCATTGCTCTTGGTGGTCTCGTGATTCTTCTCATGATCCTTTTATTCACATTTCGACCAAACAACGCAATTACATTTCCCGATGGAGCAGTCGAAAAACCAGTTAATTTTTCAACTCCAAAGCTGGTGATTCTGCATATGAATATGGCACTTCATGTGTATGAAGACATTATGAGAATGACCGAAAACTTGAGCGAGAAGTATATAATCGGGTTCGGAGCTTCGAGTACTGTCTACAAATGCGTTCTTAAAAACTGCAAACCGGTGGCCATCAAGAGGCTATACTCTCACTATCCTCAGAGCATGAAGGAATTCCAAACTGAGCTCGAGACAGTCGGAAGCATCAAGCACAGAAATCTCGTCAGCCTCCAGGGCTATTCCTTCTCCCCCTACGGCAACCTTCTCTTCTACGACTACATGGAGAACGGCAGTCTTTGGGATCTTCTTCACGGGCCAACGAAAAAGAAAAAACTTGGCTGGGACAGTCGGATGAAAATTGCACTCGGATCTGCTCAAGGGCTTTCGTATCTACACCATGATTGCAGTCCACGCATCATCCACAGGGATGTCAAAACTTCGAATATTCTTCTGGACAAGGATTTTGAGCCTCATCTTACGGATTTTGGCATTGCCAAGATTTTATGCACATCAAAGACTTATACTTCTACTTACATAATGGGAACGATTGGATATATCGACCCTGAGTATGCTCGAACCTCTCGACTCACGGAAAAATCCGATGTTTACAGTTATGGAATTGTTTTGCTCGAACTGCTGACGGGAAGAAAAGCTGTTGACAATGAGTCAAACCTCCATAATCTGATTTTATCGAAGACAGCCAACAATACTGTCATGGAAGCAGTCGATCCCGAGATTACTGCTACATGTAAGGATCTTGGAGCAGTGAAGAAAGTTTTTCAACTTGCTCTTCTATGCACGAAGAGACAGCCGTCCGACCGTCCTACGATGCATGAAGTCACCCGTGTTCTTGGAAGTCTTGAGCCAGTCTTGGCCCCGCCAAAAAACGGAGGGTCTGTGCCAACTTCAAAAGTGCCTTGCTATGTCGACGAGTATGCGAATTTGAAAATGCCACACATGGTTCAATGCCCGTCGAGTACATCTGACGCCCAGCTATTCCTCAAATTTGGAGAGGTAATATCTCAGAACAGTGAGGGTTGA 4917 44.97 MAATLVRLSISSPPKLSFFECSADNGRLFDFRHCLPNRKLRHRPFSVPRQHHCYRRLNKPTVRISNALEVRPSTQNAAFQPERPEELSVLLDVSGMMCGACVSRVKSVLSSDDRVDSVVVNMLTETAAIRLKPQMVADSATEVAGRLARKLTECGFPTNQRVSGMGVSDNVKKWKEMVKKKESMLDESGNRVAFAWTLVALCCASHASHILHSLGIHIAHGSSWDILQNSYLKGSLALGALLGPGRVIFTADLLFDGMRAFKKGSPNMNSLVGFGAAAAFTISMVSLLNPGLAWDASFFDEPLLMEKSYFFSMQVMLLGFVLLGRSLEEKARIRASSDMNELLSLLSTRSRLVIASPESDSSSETVLCHDAICIGVQTDDIRVGDSILVLPGETIPVDGKVLAGRSVVDESMLTGESLPVFKDKGIMVSAGTINWDGPLRIEASSTGSNSTISKIIRMVEDAQGREAPIQRLADSIAGPFVYTVLTLSAATFSFWYVYYFGTHIFPDVLMNDIAGPDGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLAGARQGLLIRGGDVLERLAGINCVALDKTGTLTEGKPSVSAVASYAYAESEILKIAAAVEKTASHPIAKAIVDKAELLTLTFPITKGQIVEPGFGTLAEVEGKLVAVGSLEWVHERFQEKATLSDLKKLDHSVHQSFEGSTLSNNSKTVVYVGREGEGIIGAIVICDNLRQDAASTVTSNLSGLNLEGEISPAIGKLRSLITIDLRGNRLSGQIPDEIGDSSSLRNLDLSYNEIYGDIPFSISKLKQLEMIVLKNNRLTGPIPSTLSQIPNLKILDLAQNNLSGEIPRLLYWNEVLQYLGLRGNNLVGALSPDICQLTGLWYFDVRNNSLTGSIPQSIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQANQLSGQIPAVIGLMQALAVLDLSCNKLSGLIPPILGNLTYTEKLYLHGNMLTGSIPSELGNMTKLHYLELNDNHLTGCIPPELGKLINLFDINVANNNLEGPIPDNLSSCTNLNSLSETGHGNKLNGSIPPALQRLESLTYLNLSSNNLRGSIPIELSRIGNLDTLDLSSNEISGSIPSSLGDLEHLLKLNLSGNELTGFIPAEFGNLRSVMMIDLSENHLSGPIPQEFSQLQNVLSLRLESNNLSGDVMSLINCLSLTELNVSYNNLAGVIPTSNNFSRFPSDSFVGNPGLCGSWHNYQCHESRSMGRVTISKAAIIGIALGGLVILLMILLFTFRPNNAITFPDGAVEKPVNFSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGFGASSTVYKCVLKNCKPVAIKRLYSHYPQSMKEFQTELETVGSIKHRNLVSLQGYSFSPYGNLLFYDYMENGSLWDLLHGPTKKKKLGWDSRMKIALGSAQGLSYLHHDCSPRIIHRDVKTSNILLDKDFEPHLTDFGIAKILCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHNLILSKTANNTVMEAVDPEITATCKDLGAVKKVFQLALLCTKRQPSDRPTMHEVTRVLGSLEPVLAPPKNGGSVPTSKVPCYVDEYANLKMPHMVQCPSSTSDAQLFLKFGEVISQNSEG 1638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78803560 78829676 - Bma003039.2 Bma01g02192 76709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02192 1638 Gene3D - 83 162 - -
Bma01g02192 1638 ProSitePatterns Protein kinases ATP-binding region signature. 1316 1338 IPR017441 GO:0005524
Bma01g02192 1638 PRINTS P-type cation-transporting ATPase superfamily signature 409 423 - -
Bma01g02192 1638 PRINTS P-type cation-transporting ATPase superfamily signature 579 593 - -
Bma01g02192 1638 Pfam Leucine Rich repeat 1183 1198 IPR001611 GO:0005515
Bma01g02192 1638 SMART LRR_typ_2 990 1014 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 942 965 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 1112 1135 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 1064 1088 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 871 895 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 823 847 IPR003591 -
Bma01g02192 1638 SMART LRR_typ_2 751 775 IPR003591 -
Bma01g02192 1638 Gene3D Ribonuclease Inhibitor 792 844 IPR032675 -
Bma01g02192 1638 ProSiteProfiles Leucine-rich repeat profile. 1090 1113 IPR001611 GO:0005515
Bma01g02192 1638 Gene3D Ribonuclease Inhibitor 958 1232 IPR032675 -
Bma01g02192 1638 Gene3D Phosphorylase Kinase; domain 1 1278 1385 - -
Bma01g02192 1638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1431 1443 IPR008271 GO:0004672|GO:0006468
Bma01g02192 1638 CDD HMA 91 157 IPR006121 GO:0046872
Bma01g02192 1638 SUPERFAMILY Calcium ATPase, transduction domain A 370 459 IPR008250 -
Bma01g02192 1638 SUPERFAMILY Calcium ATPase, transmembrane domain M 317 1522 IPR023298 -
Bma01g02192 1638 SUPERFAMILY HMA, heavy metal-associated domain 85 137 IPR036163 GO:0046872
Bma01g02192 1638 SUPERFAMILY RNI-like 864 1200 - -
Bma01g02192 1638 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 360 672 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02192 1638 Pfam Leucine rich repeat 801 860 IPR001611 GO:0005515
Bma01g02192 1638 Pfam Leucine rich repeat 1090 1149 IPR001611 GO:0005515
Bma01g02192 1638 Pfam Leucine rich repeat 944 1003 IPR001611 GO:0005515
Bma01g02192 1638 Pfam Heavy-metal-associated domain 91 156 IPR006121 GO:0046872
Bma01g02192 1638 Gene3D - 332 463 - -
Bma01g02192 1638 ProSitePatterns E1-E2 ATPases phosphorylation site. 581 587 IPR018303 -
Bma01g02192 1638 Gene3D Ribonuclease Inhibitor 737 791 IPR032675 -
Bma01g02192 1638 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 581 670 IPR023299 GO:0000166
Bma01g02192 1638 Pfam E1-E2 ATPase 369 554 - -
Bma01g02192 1638 Gene3D Ribonuclease Inhibitor 845 957 IPR032675 -
Bma01g02192 1638 ProSiteProfiles Heavy-metal-associated domain profile. 88 160 IPR006121 GO:0046872
Bma01g02192 1638 SUPERFAMILY Protein kinase-like (PK-like) 1288 1576 IPR011009 -
Bma01g02192 1638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 718 1624 - -
Bma01g02192 1638 Gene3D Transferase(Phosphotransferase) domain 1 1386 1583 - -
Bma01g02192 1638 CDD STKc_IRAK 1316 1579 - -
Bma01g02192 1638 ProSiteProfiles Protein kinase domain profile. 1310 1583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02192 1638 Pfam Protein kinase domain 1313 1573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02192 1638 Gene3D - 570 732 IPR023214 -
Bma01g02192 1638 Gene3D - 590 723 IPR023299 GO:0000166
Bma01g02192 1638 SMART serkin_6 1310 1583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02192 1638 Pfam haloacid dehalogenase-like hydrolase 575 733 - -
Bma01g02192 1638 ProSiteProfiles Leucine-rich repeat profile. 825 847 IPR001611 GO:0005515
Bma01g02192 1638 SUPERFAMILY L domain-like 734 919 - -
Bma01g02192 1638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 718 1624 - -
Bma01g02192 1638 ProSiteProfiles Leucine-rich repeat profile. 777 800 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02192 Bma-Chr1:78803560 Bma09g00155 Bma-Chr9:5397708 4.12E-158 dispersed
Bma11g00286 Bma-Chr11:2630417 Bma01g02192 Bma-Chr1:78803560 1.35E-62 dispersed
Bma11g00287 Bma-Chr11:2651936 Bma01g02192 Bma-Chr1:78803560 7.56E-07 dispersed
Bma06g01018 Bma-Chr6:46805334 Bma01g02192 Bma-Chr1:78803560 2.81E-37 transposed
Bma07g00880 Bma-Chr7:30132494 Bma01g02192 Bma-Chr1:78803560 5.53E-66 transposed
Bma07g01648 Bma-Chr7:52074438 Bma01g02192 Bma-Chr1:78803560 2.03E-57 transposed
Bma09g00255 Bma-Chr9:13222731 Bma01g02192 Bma-Chr1:78803560 1.25E-30 transposed
Bma10g01166 Bma-Chr10:40786128 Bma01g02192 Bma-Chr1:78803560 0 transposed
Bma14g01976 Bma-Chr14:43038823 Bma01g02192 Bma-Chr1:78803560 2.44E-15 transposed
Bma01g02192 Bma-Chr1:78803560 Bma04g00111 Bma-Chr4:880559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66297 PF00069 Pkinase 1.30E-44 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02192 K20718 - rcu:8258591 1501.11