Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02195 ATGATTGCTTACGCCGAGCCTTTCTTACAGGAAAGTGAAACAGCTTCGAGGAATGAATACGTCGACGTTTCAAGTCTCTGCAAGTCACTGAACCTCCATGCCAGTATTGTTGATTGCGGTGCTTCGGATTTAGCCAGTAGAGATTTCGGCGGAATGTATTCATCGAGGCCTCTGGCTTTAATCAGAGCTGTTGGCGCCGACGACGTAGCAAACGTGGTCAAAGCCGCTTTACGGTCGTCGAATCTGACGGTGGCGGCGAGGGGGAATGGCCACTCTATTAACGGCCAGGCGATGGCGGAACGGGGGCTCGTCATTGATACACGGTCGATGGTGGACCATTTCCAAGTAAGGACAATAAATGGCTCCGCCTACGCAGACGTCTCCGGCGGAGCATTATGGGGAGATGTTCTGAAACGATGCGTTTCCGCCTACGGGCTTTCTCCGAGGTCTTGGACGGATTATCTCAGTTTGACAGTGGGTGGAACTTTATCCAACGCCGGCGTTAGCGGCCAAGCCTTTCGTTACGGTCCTCAAACATCAAATGTAACGGAATTAGAAGTTGTAACCGGCACCGGCGACACTGTAACTTGCTCGGAAGCAGAAAATTCCGATCTCTATTTCAGCGTTCTCGGCGGTCTAGGTCAGTTTGGCATCATTACCCGTGCTCGAATTTTGCTACAAGAAGCTCCGGACATGGTGAGATGGATAAGGGTGGTGTACGCAGAGTTCGACGAATTCACTCGAGACGCAGAGTGGCTGGTGACTCGCCCGGACGGCGACTCCTTTGACTATGTGGAAGGATTCGTTTTCTCTAACAACAACAACCCGGCAACCGGTTGGCCGTCAGTGGTGCTAGAGGAGGAGGAAGAGTTTGATCCGGGTCGTATTCCTCAAACCAGTGGCTCCGTCGTCTACTGCCTGGAAGTAGCCCTTCACTACCGGAACCGGGATCACCCTTCCAAGGTCGATAAGGCGACCAATAGATTGCTCGGACGGCTGGGATTCTTAAAGCAATTCAAATCCGCGGTGGACGTGAGCTACGTGGAGTTTCTATCACGTGTGAAGCGTGCAGAGGAACAGGCTAAGAGCAACGGAATCTGGGACGCTCCTCACCCTTGGTTGAACTTGTTCGTTTCCAAATCAGGCATCGCTGATTTCGATCGTGCGGTGTTTAAAGGCATCCTCAAGGACGGTATCGGTGGGCCCATTCTCGTCTACCCGCTCTTGCGAAACAAGTGGGATGATCGGACGTCTGTGGTGTTACCGGAAGGTGAAATCTTCTACATCATAGCATTGCTTCGTTTCTCTGCACCTTACCCAAAAGGTCCTCGTGTTGAAGAACTGGTGTCTCAGAACAACCACATTATTCGTCTCTGCAACAGCAAAGGCATCCATTTCAAGCCTTATCTTCCACACTACACATCTCAAGAAGACTGGAAGCTACATTTCGGAAATCAATGGTCTCGATTCGTCAAGAGAAAGGCAACTTACGATCCAATGGCTGTTCTTGCTCCTGGGCAAAAGATCTTCTCCAGAGTCACTCAGCTTTAG 1551 51.13 MIAYAEPFLQESETASRNEYVDVSSLCKSLNLHASIVDCGASDLASRDFGGMYSSRPLALIRAVGADDVANVVKAALRSSNLTVAARGNGHSINGQAMAERGLVIDTRSMVDHFQVRTINGSAYADVSGGALWGDVLKRCVSAYGLSPRSWTDYLSLTVGGTLSNAGVSGQAFRYGPQTSNVTELEVVTGTGDTVTCSEAENSDLYFSVLGGLGQFGIITRARILLQEAPDMVRWIRVVYAEFDEFTRDAEWLVTRPDGDSFDYVEGFVFSNNNNPATGWPSVVLEEEEEFDPGRIPQTSGSVVYCLEVALHYRNRDHPSKVDKATNRLLGRLGFLKQFKSAVDVSYVEFLSRVKRAEEQAKSNGIWDAPHPWLNLFVSKSGIADFDRAVFKGILKDGIGGPILVYPLLRNKWDDRTSVVLPEGEIFYIIALLRFSAPYPKGPRVEELVSQNNHIIRLCNSKGIHFKPYLPHYTSQEDWKLHFGNQWSRFVKRKATYDPMAVLAPGQKIFSRVTQL 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78842195 78845049 - Bma003041.1 Bma01g02195 76712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02195 516 SUPERFAMILY FAD-linked oxidases, C-terminal domain 230 510 IPR016164 GO:0003824|GO:0050660
Bma01g02195 516 Pfam FAD binding domain 57 198 IPR006094 GO:0050660
Bma01g02195 516 PANTHER CYTOKININ DEHYDROGENASE 7 20 514 - -
Bma01g02195 516 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 230 510 IPR015345 GO:0009690|GO:0019139|GO:0050660
Bma01g02195 516 ProSiteProfiles PCMH-type FAD-binding domain profile. 53 229 IPR016166 GO:0071949
Bma01g02195 516 PANTHER GULONOLACTONE OXIDASE 20 514 - -
Bma01g02195 516 Gene3D - 45 511 IPR016167 -
Bma01g02195 516 SUPERFAMILY FAD-binding/transporter-associated domain-like 37 227 IPR036318 GO:0050660
Bma01g02195 516 Gene3D - 107 231 IPR016169 -
Bma01g02195 516 Gene3D - 233 469 IPR016170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02195 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - jre:108985996 761.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02195 Bma04g00113 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02195 Bma-Chr1:78842195 Bma08g00854 Bma-Chr8:46595035 7.85E-153 dispersed
Bma01g02195 Bma-Chr1:78842195 Bma04g00113 Bma-Chr4:896739 3.66E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g160 Blo01g01447 Blo12g01030 Bda01g00639 Bda03g00126 Bpe02g01249 Bpe02g00507 Bma04g00113 Bma01g02195 . . Cma01g01702 . Car09g00311 . . . Cpe06g00257 . . . . . . . Cla05g01625 Cam05g1735 Cec05g1743 Cco05g1800 Clacu05g1725 Cmu05g1609 Cre05g1738 Cone4ag1698 Cone7ag1614 Cone17ag0943 Cone20ag0286 Lsi04g01389 . . . . . Bda01g01004 . . Bpe04g00111 . . Sed05g1792 Cmo01g01809 Cmo09g00362 Cma09g00363 . Car01g01320 . . Cpe02g00289 Bhi09g03084 Tan01g3470 Cmetu07g2288 . Hepe01g1915 Mch11g0450 . . . . . . . . . . . Cme07g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004654 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 1 42