Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02201 ATGGAAACCGGTGCTTCGCCTAATGCGCTTACGGTTGAGGAGGTCTTTCGGGATCTTAAAGGTCGCAGGGCTGGCATGATTAAAGCTCTTACTACTGATTTTGAAAGATGTTATCAGCTGTGTGATCCCGAGAGGGAAAACCTCTGCCTTTATGGATATCCCGATGGGAATTGGGCTGTCAGTTTACCTGCCGACGAAGTGCCTTCTGAGCTTCCAGAACCTGCACTGGGAATTAATTTTGCCAGAGATGGGATGCATGCGAAGGAGTGGGCATCGTTGGTTGCTGTCCACAGTGATTCATGGTTACTTTCTGTAGCCTTTTTCTACGGTGCTAGGTTTGAATTTCGTCAAACTGATCGGATGAGTCTTTTTGATATGATAAACGATCTTCCAACAATATTTGAGGTTATTAAGGAGTTAGCGGAGAAACAAAAGAAGACGAAGGCATCAGTTTCAAAACACAGCCGCAACAAGTTTATATCCAAATCAAAGGAAGAACTTTCACTGCCAATGCAAGTCGTGGACGAGGAAGATGGTGATGGACAGGAAGAAACTTTATGTGGAGCCTGTGATGAGAACGATGGAACTGATGAATTCTGGATCTGCTGTGACGCGTGTGAGAAGTGGTTCCATGGAAAATGTGTTAAGATCACCGCAGCAAGAGCAGAGCACATCAAGCATTACAAATGCCCGTCTTGCAGTAACAAGAGACCCCGACAATAA 723 45.23 METGASPNALTVEEVFRDLKGRRAGMIKALTTDFERCYQLCDPERENLCLYGYPDGNWAVSLPADEVPSELPEPALGINFARDGMHAKEWASLVAVHSDSWLLSVAFFYGARFEFRQTDRMSLFDMINDLPTIFEVIKELAEKQKKTKASVSKHSRNKFISKSKEELSLPMQVVDEEDGDGQEETLCGACDENDGTDEFWICCDACEKWFHGKCVKITAARAEHIKHYKCPSCSNKRPRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 78932295 78933950 + Bma003047.1 Bma01g02201 76718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02201 240 Pfam PHD-finger 187 236 IPR019787 -
Bma01g02201 240 CDD PHD_AL_plant 186 236 IPR044104 -
Bma01g02201 240 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bma01g02201 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Bma01g02201 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Bma01g02201 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Bma01g02201 240 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3 4 239 - -
Bma01g02201 240 SMART PHD_3 186 234 IPR001965 -
Bma01g02201 240 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Bma01g02201 240 PANTHER CPG BINDING PROTEIN 4 239 IPR045104 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02201 Bma02g00545 CCT
Bma01g02201 Bma02g00545 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02201 Bma-Chr1:78932295 Bma02g00545 Bma-Chr2:11058348 9.85E-98 dispersed
Bma01g02201 Bma-Chr1:78932295 Bma01g00252 Bma-Chr1:2166370 2.14E-93 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56775 PF12165 Alfin 3.30E-62 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02201 - - csin:114296613 348.591