Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02209 ATGGGTGCTTCAGGAAAATGGGTTAAATCTCTTATGGGTCTCAGAAAGCCAGACAAGGAAGAACAAGAAAAGCAGTGTGGTAAGAGTACGAAATGGAAGCTATGGAGAAACCCATCAAGTGATTCAGGCTCTTCTTGGAAAGGCTTCAAAGGAGGTCGTAGAGCAGCGTCTGAGGGATCAGATTCTCCGCGAGCAGCTGATGCTTTTACAGCGGCCCGGGCTGCAGTACTTCGAGCTCCTCCTAAAGATTTTAAGGTTGTGAGGCAAGAATGGGCGGCTATTCGGATCCAAACTGCCTTTCGTGGCTTCCTGGCAAGACGCGCGTTGAGGGCGTTGAAAGGAGTGGTGAGGCTTCAGGCTCTGGTTCGGGGTCGGCTGGTGAGAAAGCAAGCGGCCGTGACGCTGAGATGCATGCAAGCCCTTGTTCGAGTCCAGGCTCGAGTGAGGGCTGGACGAGTAAGAATGTCTATGGAGGGTCAGGCCGTTGAACAAATAATAACCGAACATCAAACGAAGGCCGATCTCTTGAAACAGGCCGAGGCAGGGTGGTGTGATAGTAGAGGAATTTTGAATGATGTAAAGGCAAAGCTGCAAATGAGGAAAGAAGGAGCTTTCAAGAGAGAGAGAGCAATTGCATACTCTCTGGCTCAAAAGCAATGGAAGTCAACTCACTCTGCCATTTCTAGAACTAATGCCTCGTTGTCGTCTGTTAAGAATCAAGAGTTTGATAAGAATAGCTGGGGATGGAGCTGGTTAGAGAGATGGATGGCTGCTAAGCCTTGGGAAACCAGGCTGATGGAACAACCTCAGGATGATTCACTACTACTTTCGAAGACCTTCATCGATTCTTCTTCCAGCAAACAGTCGAAAGAGGTTGAATCTTCTTGCAACGTAAAAGTCAGAAAAAACAACATTTCTACTCGAATTTCTGCTAAACCTCCTCAAATAAACCAAGTTCATCGGTCCTCCTCGAGCCCGAGTTCTGATTTTCGATATGACGAGAGCTCAGCTTCGTCCTCGTTTTGCACCTCCATAACTCCGGCTTCCTGCAACACTTTAAAGACTAGTGAAAGAACAGAAGACAGCTCGAGAAATCGTCCGAGTTACATGAACTCGACTGAGTCAACGAAAGCGAAACAGAAAAGAGGTGGTTATTTACCTCATAGAAATCAGCAATCGAGGGACGAGTTCATCAAGTTCATCGACAGTTCGGCAGATGACTCAAATGAGGATTCCAAAAGTAGTGCTGGCTCTGACCCTTCTGTCAATTTATTCAAGCCTCTAGTATTTCCGAATCGATCTGTGAGAGTTCCATGA 1317 47.08 MGASGKWVKSLMGLRKPDKEEQEKQCGKSTKWKLWRNPSSDSGSSWKGFKGGRRAASEGSDSPRAADAFTAARAAVLRAPPKDFKVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRAGRVRMSMEGQAVEQIITEHQTKADLLKQAEAGWCDSRGILNDVKAKLQMRKEGAFKRERAIAYSLAQKQWKSTHSAISRTNASLSSVKNQEFDKNSWGWSWLERWMAAKPWETRLMEQPQDDSLLLSKTFIDSSSSKQSKEVESSCNVKVRKNNISTRISAKPPQINQVHRSSSSPSSDFRYDESSASSSFCTSITPASCNTLKTSERTEDSSRNRPSYMNSTESTKAKQKRGGYLPHRNQQSRDEFIKFIDSSADDSNEDSKSSAGSDPSVNLFKPLVFPNRSVRVP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79004323 79006139 + Bma003055.1 Bma01g02209 76726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02209 438 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Bma01g02209 438 SMART iq_5 111 132 IPR000048 GO:0005515
Bma01g02209 438 SMART iq_5 88 110 IPR000048 GO:0005515
Bma01g02209 438 PANTHER IQ-DOMAIN 5-RELATED 1 433 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 353 438 - -
Bma01g02209 438 Gene3D - 90 131 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 32 46 - -
Bma01g02209 438 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Bma01g02209 438 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Bma01g02209 438 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 433 - -
Bma01g02209 438 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Bma01g02209 438 MobiDBLite consensus disorder prediction 388 413 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 365 379 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 1 63 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 12 30 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 304 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02209 - - - zju:107420144 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00921 Bma-Chr1:8982641 Bma01g02209 Bma-Chr1:79004323 2.44E-100 dispersed
Bma01g02209 Bma-Chr1:79004323 Bma14g00379 Bma-Chr14:4537470 2.95E-50 dispersed
Bma03g00934 Bma-Chr3:9823273 Bma01g02209 Bma-Chr1:79004323 1.20E-17 dispersed
Bma10g00020 Bma-Chr10:311338 Bma01g02209 Bma-Chr1:79004323 1.85E-31 dispersed
Bma13g00462 Bma-Chr13:8716755 Bma01g02209 Bma-Chr1:79004323 2.09E-19 dispersed
Bma15g00349 Bma-Chr15:3729398 Bma01g02209 Bma-Chr1:79004323 7.32E-21 dispersed
Bma01g02209 Bma-Chr1:79004323 Bma07g01423 Bma-Chr7:50036173 5.71E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g85 Blo01g01460 Blo12g01017 Bda01g00627 . Bpe02g01543 . . Bma01g02209 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0275 . . . . . . . . . . . . . . . . . Car01g01342 . . Cpe02g00266 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39