Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02209 ATGGGTGCTTCAGGAAAATGGGTTAAATCTCTTATGGGTCTCAGAAAGCCAGACAAGGAAGAACAAGAAAAGCAGTGTGGTAAGAGTACGAAATGGAAGCTATGGAGAAACCCATCAAGTGATTCAGGCTCTTCTTGGAAAGGCTTCAAAGGAGGTCGTAGAGCAGCGTCTGAGGGATCAGATTCTCCGCGAGCAGCTGATGCTTTTACAGCGGCCCGGGCTGCAGTACTTCGAGCTCCTCCTAAAGATTTTAAGGTTGTGAGGCAAGAATGGGCGGCTATTCGGATCCAAACTGCCTTTCGTGGCTTCCTGGCAAGACGCGCGTTGAGGGCGTTGAAAGGAGTGGTGAGGCTTCAGGCTCTGGTTCGGGGTCGGCTGGTGAGAAAGCAAGCGGCCGTGACGCTGAGATGCATGCAAGCCCTTGTTCGAGTCCAGGCTCGAGTGAGGGCTGGACGAGTAAGAATGTCTATGGAGGGTCAGGCCGTTGAACAAATAATAACCGAACATCAAACGAAGGCCGATCTCTTGAAACAGGCCGAGGCAGGGTGGTGTGATAGTAGAGGAATTTTGAATGATGTAAAGGCAAAGCTGCAAATGAGGAAAGAAGGAGCTTTCAAGAGAGAGAGAGCAATTGCATACTCTCTGGCTCAAAAGCAATGGAAGTCAACTCACTCTGCCATTTCTAGAACTAATGCCTCGTTGTCGTCTGTTAAGAATCAAGAGTTTGATAAGAATAGCTGGGGATGGAGCTGGTTAGAGAGATGGATGGCTGCTAAGCCTTGGGAAACCAGGCTGATGGAACAACCTCAGGATGATTCACTACTACTTTCGAAGACCTTCATCGATTCTTCTTCCAGCAAACAGTCGAAAGAGGTTGAATCTTCTTGCAACGTAAAAGTCAGAAAAAACAACATTTCTACTCGAATTTCTGCTAAACCTCCTCAAATAAACCAAGTTCATCGGTCCTCCTCGAGCCCGAGTTCTGATTTTCGATATGACGAGAGCTCAGCTTCGTCCTCGTTTTGCACCTCCATAACTCCGGCTTCCTGCAACACTTTAAAGACTAGTGAAAGAACAGAAGACAGCTCGAGAAATCGTCCGAGTTACATGAACTCGACTGAGTCAACGAAAGCGAAACAGAAAAGAGGTGGTTATTTACCTCATAGAAATCAGCAATCGAGGGACGAGTTCATCAAGTTCATCGACAGTTCGGCAGATGACTCAAATGAGGATTCCAAAAGTAGTGCTGGCTCTGACCCTTCTGTCAATTTATTCAAGCCTCTAGTATTTCCGAATCGATCTGTGAGAGTTCCATGA 1317 47.08 MGASGKWVKSLMGLRKPDKEEQEKQCGKSTKWKLWRNPSSDSGSSWKGFKGGRRAASEGSDSPRAADAFTAARAAVLRAPPKDFKVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRAGRVRMSMEGQAVEQIITEHQTKADLLKQAEAGWCDSRGILNDVKAKLQMRKEGAFKRERAIAYSLAQKQWKSTHSAISRTNASLSSVKNQEFDKNSWGWSWLERWMAAKPWETRLMEQPQDDSLLLSKTFIDSSSSKQSKEVESSCNVKVRKNNISTRISAKPPQINQVHRSSSSPSSDFRYDESSASSSFCTSITPASCNTLKTSERTEDSSRNRPSYMNSTESTKAKQKRGGYLPHRNQQSRDEFIKFIDSSADDSNEDSKSSAGSDPSVNLFKPLVFPNRSVRVP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79004323 79006139 + Bma003055.1 Bma01g02209 76726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02209 438 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Bma01g02209 438 SMART iq_5 111 132 IPR000048 GO:0005515
Bma01g02209 438 SMART iq_5 88 110 IPR000048 GO:0005515
Bma01g02209 438 PANTHER IQ-DOMAIN 5-RELATED 1 433 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 353 438 - -
Bma01g02209 438 Gene3D - 90 131 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 32 46 - -
Bma01g02209 438 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Bma01g02209 438 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Bma01g02209 438 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 433 - -
Bma01g02209 438 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Bma01g02209 438 MobiDBLite consensus disorder prediction 388 413 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 365 379 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 1 63 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 12 30 - -
Bma01g02209 438 MobiDBLite consensus disorder prediction 304 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00921 Bma-Chr1:8982641 Bma01g02209 Bma-Chr1:79004323 2.44E-100 dispersed
Bma01g02209 Bma-Chr1:79004323 Bma14g00379 Bma-Chr14:4537470 2.95E-50 dispersed
Bma03g00934 Bma-Chr3:9823273 Bma01g02209 Bma-Chr1:79004323 1.20E-17 dispersed
Bma10g00020 Bma-Chr10:311338 Bma01g02209 Bma-Chr1:79004323 1.85E-31 dispersed
Bma13g00462 Bma-Chr13:8716755 Bma01g02209 Bma-Chr1:79004323 2.09E-19 dispersed
Bma15g00349 Bma-Chr15:3729398 Bma01g02209 Bma-Chr1:79004323 7.32E-21 dispersed
Bma01g02209 Bma-Chr1:79004323 Bma07g01423 Bma-Chr7:50036173 5.71E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02209 - - zju:107420144 554.673