Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02212 ATGGCTTTATCTCCCAAAACTCTACTGGCAACGAATAGATTCATGTGTGAGATATGTAACAAAGGGTTCCAGAGAGATCAGAATCTGCAGCTACACAGAAGAGGACATAATTTGCCATGGAAACTGAAGCGAAGAACAAGCAAGGAAGTGAAGAAGAAGGTGTATATATGTCCAGAAATTACATGTGTGCATCATGACCCTTCACGGGCTCTGGGAGACCTCACTGGAATTAAAAAGCATTTCTTCAGAAAACATGGCGAGAAGAAATGGAAGTGTGAAAAATGCTCCAAGCGGTACGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAGATTTGTGGAACAAGAGAGTATAGATGTGATTGTGGGGCCATCTTCTCAAGGAGGGACAGTTTCATCACGCACAGAGCTTTCTGCGATGCTCTAACTCAAGAGAGTGTTAAAGCAATGGCAGCAGTAAACCCACTTCTTTCAGCTTCTCAATCTCAGCTCCATAGCTATGGCTGTTTCCAGCAAGTACCAGTGAAAAACGAACCAGACCTCAGATCAGCTCCTCAAGTTCCTCCTTGGCTGACGAACCAACCTGCGTTAATAGCATCTGAACCGGTTTCATGCCTCCAGACGATGGATCATCCAACCGCACTGTTGTTTTCGTCTTCCATAGAACAGTCTCTTCTTCATCCCCGAAACCCTAACCCTAATTCTACATCTTCCTCCACCATGTCTGCAACTGCGTTGCTGCAAAAAGCCTCGCTAATGGGCGCAACCGCGGGCAGCTCTTCTCCGTTGTTTGTACCTCACGAAACTCATACGACTCGGAATAATGGAGCTGCGATCAGTTCAGCTCCAACAACGTCATCAATGGCGTCGTCTTCGCGTGAAGAAATGGCGGAAGATCAGCTTGGTATTGGTTCTGCAATTTTTGGGAATAAAACTGCTTCTTTTGTTTCATCTGGGGCGGGAGGTGGAGGTCCTTCTCTTCTTCACGATATGATGGTTTCCATTTCTGGGTTTGAAGAGCCGTCTTTAGAAGAGACGCTAAGTGGAATGTTTTCTCAGAGGAAAGACGAACACGGTATGGAGGATATACCTTCGAATCCAAACGCAGAGGTCTATTTCAGGAGAAGCAATGGAGGTACTGCCAAGGACGGCAATGGCGGTGAAGAGACGAGGGACTTCTTGGGTCTGAGACCATTCTCACACAGAGACTTCATCAATTTAACTATGCTCAATGATGTTGATTCTTCGTCGGCTTTCTCTCAGCATAATCAGAACCAGATCACTTGGCCTTGA 1290 46.05 MALSPKTLLATNRFMCEICNKGFQRDQNLQLHRRGHNLPWKLKRRTSKEVKKKVYICPEITCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGAIFSRRDSFITHRAFCDALTQESVKAMAAVNPLLSASQSQLHSYGCFQQVPVKNEPDLRSAPQVPPWLTNQPALIASEPVSCLQTMDHPTALLFSSSIEQSLLHPRNPNPNSTSSSTMSATALLQKASLMGATAGSSSPLFVPHETHTTRNNGAAISSAPTTSSMASSSREEMAEDQLGIGSAIFGNKTASFVSSGAGGGGPSLLHDMMVSISGFEEPSLEETLSGMFSQRKDEHGMEDIPSNPNAEVYFRRSNGGTAKDGNGGEETRDFLGLRPFSHRDFINLTMLNDVDSSSAFSQHNQNQITWP 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79042450 79043929 + Bma003059.1 Bma01g02212 76729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02212 429 Gene3D Classic Zinc Finger 1 61 - -
Bma01g02212 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 36 IPR013087 -
Bma01g02212 429 SMART c2h2final6 55 85 IPR013087 -
Bma01g02212 429 SMART c2h2final6 90 110 IPR013087 -
Bma01g02212 429 SMART c2h2final6 14 36 IPR013087 -
Bma01g02212 429 Gene3D Classic Zinc Finger 68 148 - -
Bma01g02212 429 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 406 - -
Bma01g02212 429 Pfam Zinc-finger double-stranded RNA-binding 14 36 IPR022755 -
Bma01g02212 429 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Bma01g02212 429 SUPERFAMILY beta-beta-alpha zinc fingers 13 110 IPR036236 -
Bma01g02212 429 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 1 406 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02212 Bma-Chr1:79042450 Bma09g00967 Bma-Chr9:49199775 2.33E-119 dispersed
Bma01g02212 Bma-Chr1:79042450 Bma13g01231 Bma-Chr13:45549782 1.02E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56776 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02212 K25870 - vvi:100257789 439.113