Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02229 ATGGAAGATTTGGAAAGTAATGATTCGCAATTTCAGCGTAGAAGGGAAGGCATTATGCATTGTTCATCTTCTGAGATGAACACCAACCCAAATCCAATGCCTGAAAAGATTTCAGGAATGTCAGTTGGGACTCTTTCTCTGTACAAATCTTCAATTGGAAGCTCTGGGGAGGCTTTCTTTTCTTCTGGTTGGGATTCGTTTGCTAACCTGGGTCAGAGGGTGAATTTTGGATCCTTTATTTCTCATGATGAGTTATCCAGTTCTTACCAGCATAACGTCTTGGAAAATCCTCACTCATTTGATTCGACTTATGCCGAGATGGTTCCGAAATTTCCAAGCTTTTCAAGTGGCAATTTCTCAGAAATGGGTAGTTCATTTGTTCTACCTCAATATCCCCAGATTGTTAATGATGATTGTCTTTCAAATATTCAAGAAAACAGAGCCGCCGGCGACAAGAGCAGAAAGCGAGTGCCTGATACTGCTTCATCATTCAGATCATATGAGAAAGTTGAAATGGATTTGGGTAAGGATTCAAATGGAGAAAGCTCTGATGGTGTAAGAGAACAAGATCAGAAAAAACCAAAGATTGATGACAACAACGGCAGGAATTTGCTTAACAAGCCGACCACAAAACAAGCAAAAGACAACTCTCCCAAGGCAGAAACCTCCAGGGAAAACTACATTCACGTTAGAGCCCGCAGAGGGGAGGCTACAAATAGTCACAGCCTCGCCGAAAGGATAAGGAGAGAAAAGATTAGCGAGCGGATGAAATTGCTTCAAGAACTCGTCCCGGGATGCAACAAGATTACAGGCAAGGCGGTAATGCTGGATGAAATTATCAATTATGTTCAATCACTGCAGCAGCAGGTCGAGTTTCTGTCTATGAAACTTGCCACTGTAAATCCGGATGTTTATACCGATGTAGAGGGCATTCTATCGAAAGATGTAAGTATGATCAAGGACTTGTTGATTCTTCTGTCGAACAATACGAAACTGGCTTTAGCTGTGTTTTATTCCTCCAGATGCTTCACTCTCAGGGCTCCAATGGAGGAATTCTCGGGGTTGGCTCTTCTCACCGGTTCTTCCCTCGACGAATGTTACCGCCTCAATCTGCGTTTTCTCAGTTTCTTCCTGTCTCGAGTGAGTTTAGGATCCTCGAATGAAGCCATCGCCACCACCTCTCCTTCGTTAGCAGCACTAACGGAAGAAAAGTTTCAGACAGTTCTCCAGAATTGA 1236 43.2 MEDLESNDSQFQRRREGIMHCSSSEMNTNPNPMPEKISGMSVGTLSLYKSSIGSSGEAFFSSGWDSFANLGQRVNFGSFISHDELSSSYQHNVLENPHSFDSTYAEMVPKFPSFSSGNFSEMGSSFVLPQYPQIVNDDCLSNIQENRAAGDKSRKRVPDTASSFRSYEKVEMDLGKDSNGESSDGVREQDQKKPKIDDNNGRNLLNKPTTKQAKDNSPKAETSRENYIHVRARRGEATNSHSLAERIRREKISERMKLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVYTDVEGILSKDVSMIKDLLILLSNNTKLALAVFYSSRCFTLRAPMEEFSGLALLTGSSLDECYRLNLRFLSFFLSRVSLGSSNEAIATTSPSLAALTEEKFQTVLQN 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79292929 79294546 - Bma003078.1 Bma01g02229 76746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02229 411 MobiDBLite consensus disorder prediction 1 35 - -
Bma01g02229 411 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 150 - -
Bma01g02229 411 MobiDBLite consensus disorder prediction 21 35 - -
Bma01g02229 411 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g02229 411 MobiDBLite consensus disorder prediction 202 216 - -
Bma01g02229 411 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 149 316 - -
Bma01g02229 411 MobiDBLite consensus disorder prediction 148 162 - -
Bma01g02229 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 301 IPR036638 GO:0046983
Bma01g02229 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 286 IPR011598 GO:0046983
Bma01g02229 411 Gene3D - 233 305 IPR036638 GO:0046983
Bma01g02229 411 SMART finulus 242 292 IPR011598 GO:0046983
Bma01g02229 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 150 IPR024097 GO:0006355
Bma01g02229 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 149 316 IPR024097 GO:0006355
Bma01g02229 411 MobiDBLite consensus disorder prediction 146 226 - -
Bma01g02229 411 CDD bHLH_AtBPE_like 226 311 - -
Bma01g02229 411 Pfam Helix-loop-helix DNA-binding domain 239 287 IPR011598 GO:0046983
Bma01g02229 411 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02229 Bma-Chr1:79292929 Bma01g02239 Bma-Chr1:79519283 0 dispersed
Bma01g02229 Bma-Chr1:79292929 Bma06g00747 Bma-Chr6:38766134 1.38E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56777 PF00010 HLH 8.40E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02229 - - qsu:111985241 323.939