Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02230 ATGAAGCCCATTGACGATCTTAAAAATGGTGGCAGTAGTAATAATAGCTGGTTGGGTTTTTCCCTGTCGCCATACATGAAAATAGAGGATAATGCTTCAACGTCTGTCTCGAATGCTTTTCCGACCGGCTGCTACTCTTACCCTCATTTCAACGGCTCGACGTTCGGCTATGAGATTGGTGGAAATGGCGGATTTCACTCACCATTGACTGTGATGCCCCTCAAGCTCGACGGATCTCTTTCGATTATGGAAGCTCTCACTAGATCACAGCCCGAAGGGTTGGTTCTCAATTCCTCGCCGAAGTTGGAGGATTTTCTTGGGGGAGCAAGCTTAGGAACACTCACAAACGAGTATGGAAGCCATGGAAAAGAAGCAATCTTTTACAATCACAGCGATTCAGAAACAGAGAGGGAACTTTCTCTCGATCTTCTTCAGCAGCCATACAGGCAACACGAGAGCCACATTCCTGTTAATTCCCATCCCTACATTTCAGGAATCCCCTGTCACGGTTTATACAATCCCTCATCAGAGGAGGAATCGAAGCTCCATATGTCCAACTGGGTAGTTCGTCAGTACTCTGTAAATCAGCCACTGGAGCAGCATTTAACCAACGAGATGATTGATGTCGGAGCTTCTTCCGGCTCTGTTGGTGCGCTGAGCTGCGGGGATTTACAGTCGCTAAGTCTATCAATGAGCCCTGGTTCACAGTCTAGCTGCGTAACCGCTCCCAGCCAGATCTCGGCAACTGGTGTAGAATGTGCAGCCATTAAAACGAAGAAGAGATGCTCTTCGAAGATGGGGCAGAAGCAGCCCATCCATAGGAAGTCCATTGATACTTTTGGACAAAGAACATCGCAGTACAGAGGGGTTACGAGGTTTAGGCATCGATGGACCGGAAGGTATGAAGCTCACTTATGGGATAACAGTTGCAAAAAAGAAGGTCAAACCAGAAAAGGAAGACAAGATTCCTATCTATATTTACTATCAAGACTATGTATTTTTCTTATTAACTTGCTGGAGAACTATCATACTGAGCTTGAAGAAATGAAGAACATGACCCGGCAGGAATATGTAGCTCACTTGAGAAGAAAAAGTAGTGGTTTTTCCCGTGGAGCTTCGATGTATAGAGGAGTGACAAGGCATCACCAGCATGGAAGATGGCAAGCTCGGATTGGCCGAGTCGCCGGAAACAAAGATCTTTATCTGGGGACATTTAGCACCCAAGAGGAAGCTGCTGAAGCTTATGACATTGCTGCGGTGAAGTTCCGAGGAGTAAATGCCGTCACCAACTTCGACATTTCACGTTATGACGTCGAGAAAATCATAGCCAGCAGTACTCTACTGGCTGGCGAATTTGCTCGACGAAGCAAAGCCATAGATCACAAACCACAAGAGAAGGACAGTGAGGAAATCAATCTCTCTGAAAACACCATCGGCTGCAGCGGGGGAACTCATTGGCGAATTGAATCTGCCAGCAGTAAGAACATGGTAAACATGGCCCAGAGTCTGATGGGAATGGAATCGGTCAACTCGACCGATCCCATAGTCGACGAAACGACCAAGGCCGGGCCGCTTTTTCCCATTCCCTCACCTACGACTGCCACGTTGAGCCGCCCAAGAAACGCAAATGCAGACAAAAGCAGCGTGGCCATGCTCTTTGCAAAGCCCCCGTTGGCATGGCTGCCCACCGCACAGCTGAGGTCTCCTGTTATTTCAATGGCTCAGCTGCCTGTTTTTGCAGCGTGGAACGACACCTAA 1758 47.95 MKPIDDLKNGGSSNNSWLGFSLSPYMKIEDNASTSVSNAFPTGCYSYPHFNGSTFGYEIGGNGGFHSPLTVMPLKLDGSLSIMEALTRSQPEGLVLNSSPKLEDFLGGASLGTLTNEYGSHGKEAIFYNHSDSETERELSLDLLQQPYRQHESHIPVNSHPYISGIPCHGLYNPSSEEESKLHMSNWVVRQYSVNQPLEQHLTNEMIDVGASSGSVGALSCGDLQSLSLSMSPGSQSSCVTAPSQISATGVECAAIKTKKRCSSKMGQKQPIHRKSIDTFGQRTSQYRGVTRFRHRWTGRYEAHLWDNSCKKEGQTRKGRQDSYLYLLSRLCIFLINLLENYHTELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAVKFRGVNAVTNFDISRYDVEKIIASSTLLAGEFARRSKAIDHKPQEKDSEEINLSENTIGCSGGTHWRIESASSKNMVNMAQSLMGMESVNSTDPIVDETTKAGPLFPIPSPTTATLSRPRNANADKSSVAMLFAKPPLAWLPTAQLRSPVISMAQLPVFAAWNDT 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79307280 79309803 - Bma003079.1 Bma01g02230 76747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02230 585 Pfam AP2 domain 375 424 IPR001471 GO:0003700|GO:0006355
Bma01g02230 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 339 584 - -
Bma01g02230 585 Coils Coil 335 355 - -
Bma01g02230 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 339 584 - -
Bma01g02230 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 321 - -
Bma01g02230 585 Gene3D AP2/ERF domain 374 434 IPR036955 GO:0003700|GO:0006355
Bma01g02230 585 Gene3D AP2/ERF domain 285 331 IPR036955 GO:0003700|GO:0006355
Bma01g02230 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 321 - -
Bma01g02230 585 CDD AP2 373 434 IPR001471 GO:0003700|GO:0006355
Bma01g02230 585 SMART rav1_2 374 438 IPR001471 GO:0003700|GO:0006355
Bma01g02230 585 SUPERFAMILY DNA-binding domain 373 434 IPR016177 GO:0003677
Bma01g02230 585 ProSiteProfiles AP2/ERF domain profile. 374 432 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02230 Bma-Chr1:79307280 Bma14g01163 Bma-Chr14:16921957 2.64E-90 dispersed
Bma15g01104 Bma-Chr15:43913640 Bma01g02230 Bma-Chr1:79307280 8.64E-26 transposed
Bma01g02230 Bma-Chr1:79307280 Bma05g00024 Bma-Chr5:1876250 1.02E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56778 PF00847 AP2 4.70E-09 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02230 K09285 - jre:108983297 671.003