Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02233 ATGAACTTCAAGAACTTTGGGTATGATCCGCCGACTGAAAACGGCTATTCAAGTGGTGGAAGAGCACAGGGGAGTTTTCCATTGACGAGACAATCATCAATCTATTCTCTGACTTTTGATGAGTTGCAGAACACCTTGGGAGCGTCAGGGAAGGACTTTGGCTCCATGAATATGGATGAGCTCTTGAAGAATATTTGGAGCGCTGAAGAAATGCAAACCATGGCTTCGTGTAGCACCACAGCTGCACAGCAAGTTTGTGCTAATTCCAGTGTGCATTTACAAAGGCAGGGCTCCTTAACATTGCCCCGAACGCTCAGCCAGAAGACGGTGGATGAGGTTTGGAGGGATTTATCAAATGTAGATGATTTAGGTAAAGGTGGAAATGGTGGTATTTTATCTATGCCACGGAGACAGCCAACTTTGGGGGAGATGACTCTAGAGGAGTTCTTGTTTAAAGCTGGTGTTGTGAGGGAAGACAACCAGTTTCTAGGAAAGCCTAATAATGGAGGATTTTTTGGTTATACAAATGGTTTAGGAATTGACTTCCAGCAGCCAGATTCGAACACAGGATTAGTAGGTAATAGAATTTTAGATAATACTAGTCAAATACCAATCCAGTCATCAAATTTGCCTTTGAATGTTGATGGGGTTAGATCTAATCATCAACAACAACAGAAGATTTTCCCCAAACAACCCACTGTAACATATGGACAACTGCCTTTATCAAGTAGTTCTCAGTTGGAAGATCTAGAAATGAAAGAAGGAAGTTCAGGATATGCAGATAATCGTTTAAATTCAAATGTAAACCAAAGATCTGTCCTGCAAAGTGGACGTATGGGAGTGATTGGTTTAAAAGGCGAGCATGTTAATGTTGCAACAGTGTCACCAGGGAACCAAGTTTCATCAGATGGAATTGGGAAGAGTAATGGCGATATCTCTTCCATTTCATCTGCGCCTTACATGTTTAATGGTGGACTAAGAGGGAGGAGGTCAAATGGAACAGTGGAGAAGGCTGCTGAGAGGAGACAGAAAAGAATGATTAAGAACAGAGAATCTGCAGCAAGATCCCGAGCTCGCAAGCAGGCTTATACAACGGAACTGGAAGCTGAAGTTGCAAGTCTAAAAGAGGAGAATGAAAAATTGCAGAAGAAACAGGAAGTGGAGATGATGAATATGCTCAAGGGTGGGAAGCGAAGATGCTTGAGACGGACACAGACGGGACCGTGGTAA 1230 42.85 MNFKNFGYDPPTENGYSSGGRAQGSFPLTRQSSIYSLTFDELQNTLGASGKDFGSMNMDELLKNIWSAEEMQTMASCSTTAAQQVCANSSVHLQRQGSLTLPRTLSQKTVDEVWRDLSNVDDLGKGGNGGILSMPRRQPTLGEMTLEEFLFKAGVVREDNQFLGKPNNGGFFGYTNGLGIDFQQPDSNTGLVGNRILDNTSQIPIQSSNLPLNVDGVRSNHQQQQKIFPKQPTVTYGQLPLSSSSQLEDLEMKEGSSGYADNRLNSNVNQRSVLQSGRMGVIGLKGEHVNVATVSPGNQVSSDGIGKSNGDISSISSAPYMFNGGLRGRRSNGTVEKAAERRQKRMIKNRESAARSRARKQAYTTELEAEVASLKEENEKLQKKQEVEMMNMLKGGKRRCLRRTQTGPW 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79375887 79377880 - Bma003082.2 Bma01g02233 76750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02233 409 Coils Coil 364 391 - -
Bma01g02233 409 Pfam bZIP transcription factor 339 385 IPR004827 GO:0003700|GO:0006355
Bma01g02233 409 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 13 409 IPR043452 GO:0003700|GO:0045893
Bma01g02233 409 Gene3D - 339 393 - -
Bma01g02233 409 CDD bZIP_plant_BZIP46 341 386 - -
Bma01g02233 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700|GO:0006355
Bma01g02233 409 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 13 409 - -
Bma01g02233 409 SMART brlzneu 337 393 IPR004827 GO:0003700|GO:0006355
Bma01g02233 409 SUPERFAMILY Leucine zipper domain 341 387 IPR046347 GO:0003700|GO:0006355
Bma01g02233 409 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g02233 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 384 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02233 Bma-Chr1:79375887 Bma04g00163 Bma-Chr4:1410423 0 dispersed
Bma05g01395 Bma-Chr5:53358736 Bma01g02233 Bma-Chr1:79375887 6.07E-07 dispersed
Bma01g02233 Bma-Chr1:79375887 Bma01g02274 Bma-Chr1:79881660 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56780 PF00170 bZIP_1 5.00E-13 CL0018 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02233 K14432 - csin:114258286 467.618