Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02239 ATGGAAGATTTGGAAAGTAATGATTCGCAATTTCAGCGTAGAAGGGAAGGCATTATGCATTGTTCATCTTCTGAGATGAACACCAACCCAAATCCAATGCCTGAAAAGATTTCAGGAATGTCAGTTGGGACTCTTTCTCTGTACAAATCTTCAATTGGAAGCTCTGGGGAGGCTTTCTTTTCTTCTGGTTGGGATTCGTTTGCTAACCTGGGTCAGAGGGTGAATTTTGGATCCTTTATTTCTCATGATGAGTTATCCAGTTCTTACCAGCATAACATGTTGGAAAATCCTCACTCATTTGATTCGACTTATGCCGAGATGGTTCCGAAATTTCCGAGCTTTTCAAGTGGCAATTTCTCAGAAATGGGTAGTTCATTTGTTCTACCTCAATATCCCCAGATTGTTAATGATGATTGTCTTTCAAATATTCAAGAAAACAGAGCCGCCGGATCGTCCCCAAGCGACAAGTGCAGAAAGCGAGGGCCTGATACTGCTTCATCATTCAGATCATATGAGAAAGTTGAAATGGATTTGGGTAAGGATTCAAATGGAGAAAGCTCTGATGGTGTAAGACAACAAGATCAGAAAAAACCAAAGATTGATGACAACAACGGCAGGAATTTGCTTAACAAGCCGACCATAAAACAAGCAAAAGACAACTCTCCCATGGCAGAAACCTCCAAGGAAAACTACATTCACGTTAGAGCCCGCAGAGGGGAGGCTACAAATAGTCACAGCCTCGCCGAAAGGATAAGGAGAGAAAAGATTAGCGAGCGGATGAAATTGCTTCAAGAACTCGTCCCGGGATGCAACAAGATTACAGGCAAGGCGGTAATGCTGGATGAAATTATCAATTATGTTCAATCACTGCAGCAACAGGTCGAGTTTCTGTCTATGAAACTTGCCACTGTAAATCCGGATGTTTATACCGATGTAGAGGGCATTCTATCGAAAGATGTAAGTATGATCAAGGACTTGTTGATTCTTCTGTCGAACAATACGAAACTGGCTTTAGCTGTGTTTTATTCCTCCAGATGCTTCACTCTCAGGGCTCCAATGGAGGAATTCTCGGGGTTGGCTCTTCTCACCGGTTCTTCCCTCGAAGAATGA 1110 42.61 MEDLESNDSQFQRRREGIMHCSSSEMNTNPNPMPEKISGMSVGTLSLYKSSIGSSGEAFFSSGWDSFANLGQRVNFGSFISHDELSSSYQHNMLENPHSFDSTYAEMVPKFPSFSSGNFSEMGSSFVLPQYPQIVNDDCLSNIQENRAAGSSPSDKCRKRGPDTASSFRSYEKVEMDLGKDSNGESSDGVRQQDQKKPKIDDNNGRNLLNKPTIKQAKDNSPMAETSKENYIHVRARRGEATNSHSLAERIRREKISERMKLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVYTDVEGILSKDVSMIKDLLILLSNNTKLALAVFYSSRCFTLRAPMEEFSGLALLTGSSLEE 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79519283 79520774 - Bma003093.1 Bma01g02239 76756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02239 369 MobiDBLite consensus disorder prediction 1 35 - -
Bma01g02239 369 MobiDBLite consensus disorder prediction 1 20 - -
Bma01g02239 369 MobiDBLite consensus disorder prediction 21 35 - -
Bma01g02239 369 MobiDBLite consensus disorder prediction 190 204 - -
Bma01g02239 369 MobiDBLite consensus disorder prediction 152 166 - -
Bma01g02239 369 MobiDBLite consensus disorder prediction 146 226 - -
Bma01g02239 369 Pfam Helix-loop-helix DNA-binding domain 243 291 IPR011598 GO:0046983
Bma01g02239 369 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 146 IPR024097 GO:0006355
Bma01g02239 369 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 320 IPR024097 GO:0006355
Bma01g02239 369 MobiDBLite consensus disorder prediction 206 226 - -
Bma01g02239 369 Gene3D - 237 309 IPR036638 GO:0046983
Bma01g02239 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 290 IPR011598 GO:0046983
Bma01g02239 369 CDD bHLH_AtBPE_like 230 315 - -
Bma01g02239 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 305 IPR036638 GO:0046983
Bma01g02239 369 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 142 320 - -
Bma01g02239 369 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 146 - -
Bma01g02239 369 SMART finulus 246 296 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02229 Bma-Chr1:79292929 Bma01g02239 Bma-Chr1:79519283 0 dispersed
Bma01g02239 Bma-Chr1:79519283 Bma05g01223 Bma-Chr5:51635572 1.46E-45 dispersed
Bma01g02239 Bma-Chr1:79519283 Bma06g00747 Bma-Chr6:38766134 3.90E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56781 PF00010 HLH 7.20E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02239 - - qsu:111985241 330.487