Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02245 ATGTTGTGCGCTTGTTCAGGGGAGCAATTCAAGTTCGAAGAACGGCCAAACTCGCCGGAATCTCTTGCGACGAGGGATTTCTCTGCAAGTTGCCTTTCGTCGAGAACTGGAGACTGGGAGTCAAAATATGAAGATATTCAAGTTGATGAAGTTGAATCCACTCTGAAAGAAGCCCTCTCCTTGAACTACGAGGAAGCGAGGGCTTTGTTGGGGAGACTTGAATATCAGAGAGGGAATTTTGATGCTGCCCTTCAGGTTTTTCAGGGTATTGATGTTAAAGTTTTAGCCCCAAGAATGACTAAAGCCATTGCCGAGAGAATGAAGCTGCGAAAACCTCGATCGAAAAGCGATTCTGTTTCTTCTGGTTTGATGTCCATTCATTCTGTCAGCCTACTGCTTGAAGCAATACTTCTCAAGGCAAAATCACTCCAGAACCTTGGGAGATTCAAAGAGGCTGCAAAGGAATGCAAAACAATTCTTGATGTAGTAGACTCTGCTTTGCCAATCGGAATGCCGGGGTTGGTTGAAGAAGACAGCAAATTGCAGGAAATGCTTCACAAGGCGTTAGAGTTGCTACCAACATTATGGACAAGTGCAGGATATCTCGAAGAGGCTATTATTGCTTATCGGCGAGCTCTCATTAAGCCGTGGAATATCGAGCTGGAGAGGTTAGCCATTGTACAAAAAGAATTGGCTGCTATGTTGCTCTACGGCGGAGTTGAGTCGAGCTTGTCCCTCCCTCTACACATATGGGGTCCAATCTCTTCTACTGCCCCTAAAAATAACACAGAAGAAGCAATAGTTTTACTCTTAATACTCGTGAGGAAAGCGGCAATGAGAGAAATCAAATGGGATCAAGAGATTATGGACCATCTGACCTATGCCCTTTCAATAACCGGACAGTTCGAATTGCTGGCCGAACATGTGGAGCAGATACTTCCGGGTATATATGGTAGAGCTGAGAGATGGTTTTTTCTTGCCCTTTGTTACAGTGCTGCGAAACAGCAGGAGACTGCCCTAAATCTTTTGAAGAAAATTTGCGGTTGTTCTGAGGGAAATCAAAAACCCCATTTTCCAGCTTTATTGTTGGGAGCGAAATTGTGTTCCGAGAATGCGAAACATGCTCGGGAAGGCATATTTTTTGCTCGTAAATTGATCGACTCGATCAATCATCAAAACCAACATTCTCTCTGTCAAGCTCATAAATTTCTTGGTATTTGCTATGGCAGTGCAGCTAGAATTTCCGTATTGGATTCCGAACGAGTTCTTTTTCAGAAAGAGGCTTTGAAGATCTTGAATTTAGCTGCAAATGGCTGTAATGATCCTGAACTAAGATTTAACCTTGGTCTGGAACATGCAATGCAGAGGAATCTGGATCTTGCCTTTGATAATTTGATGTTGTTTGTAGAAATGGTTGGTGGAAGTGGAAAGGGATTGAAGCTGTTGGCACTTATAATTTCTGCTCAACAGCGGCTCGAGAATGCCGAAACCATTGTCGACTTTGCTCTGGATGAGACTGAGTCAAATGGTCATTTAGAACTTCTTCAACTAAAGGGCGCTCTTCAAATTGCACGGAAATATCCCAAGCAAGCTATAGACACCTATAGAATCATGCTAGCTCATATTCAAGCACAAAGGGAGATTCAGCTTCAATCTGAGAACTTAGAGCAAGCAAAAAAACCCCATTCTGAGGCATCCGAAGAGAGAAATTTCGAAGTGGGAGCATGGCAAGATTTAGCCACCGTTTATTTGGAACTCGGTTCGTGGGCAGATGCCGAAATTTGTCTTGACAAAGCCAAGGCGATTGAGTATCATTCCCCAATAACATGGCACAAAACAGGTACTTTGTTAGAAGCAAAATCTATGCATAGAGAAGCTCTTGCATCATTCTCACTCTCGTTATCGGTTGATCCTGATTATGTCCCGAGCATTGTTTCTACCGCTGAAGTGTTGATGAAATTAGGCGACCAATCTCTTCCGATTGCACGAAGTTTATTAATGAGTGCTATAAGATTAGAGCCAACTAACCACGATGCATGGTTCAGTCTGGGACTTATATCGAGAAAGGAAGGGTTGCTTCAACAAGCTGGCGACTTTTTTCAAGCTGCACACGATCTCAAGTACTCGGCCCCTGTCCGAAGCTTTATGTAA 2151 43.42 MLCACSGEQFKFEERPNSPESLATRDFSASCLSSRTGDWESKYEDIQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDVKVLAPRMTKAIAERMKLRKPRSKSDSVSSGLMSIHSVSLLLEAILLKAKSLQNLGRFKEAAKECKTILDVVDSALPIGMPGLVEEDSKLQEMLHKALELLPTLWTSAGYLEEAIIAYRRALIKPWNIELERLAIVQKELAAMLLYGGVESSLSLPLHIWGPISSTAPKNNTEEAIVLLLILVRKAAMREIKWDQEIMDHLTYALSITGQFELLAEHVEQILPGIYGRAERWFFLALCYSAAKQQETALNLLKKICGCSEGNQKPHFPALLLGAKLCSENAKHAREGIFFARKLIDSINHQNQHSLCQAHKFLGICYGSAARISVLDSERVLFQKEALKILNLAANGCNDPELRFNLGLEHAMQRNLDLAFDNLMLFVEMVGGSGKGLKLLALIISAQQRLENAETIVDFALDETESNGHLELLQLKGALQIARKYPKQAIDTYRIMLAHIQAQREIQLQSENLEQAKKPHSEASEERNFEVGAWQDLATVYLELGSWADAEICLDKAKAIEYHSPITWHKTGTLLEAKSMHREALASFSLSLSVDPDYVPSIVSTAEVLMKLGDQSLPIARSLLMSAIRLEPTNHDAWFSLGLISRKEGLLQQAGDFFQAAHDLKYSAPVRSFM 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79593859 79596506 - Bma003097.1 Bma01g02245 76762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02245 716 PANTHER PROTEIN NPGR1 1 715 - -
Bma01g02245 716 SUPERFAMILY TPR-like 65 353 IPR011990 GO:0005515
Bma01g02245 716 SUPERFAMILY TPR-like 550 707 IPR011990 GO:0005515
Bma01g02245 716 Coils Coil 56 76 - -
Bma01g02245 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Bma01g02245 716 SUPERFAMILY HCP-like 322 540 - -
Bma01g02245 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Bma01g02245 716 SMART tpr_5 320 353 IPR019734 GO:0005515
Bma01g02245 716 SMART tpr_5 133 166 IPR019734 GO:0005515
Bma01g02245 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Bma01g02245 716 SMART tpr_5 573 606 IPR019734 GO:0005515
Bma01g02245 716 Gene3D Tetratricopeptide repeat domain 546 712 IPR011990 GO:0005515
Bma01g02245 716 Gene3D Tetratricopeptide repeat domain 256 545 IPR011990 GO:0005515
Bma01g02245 716 Gene3D Tetratricopeptide repeat domain 15 239 IPR011990 GO:0005515
Bma01g02245 716 Coils Coil 485 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02245 Bma-Chr1:79593859 Bma06g01610 Bma-Chr6:52269087 0 dispersed
Bma01g02245 Bma-Chr1:79593859 Bma02g00760 Bma-Chr2:39226439 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02245 K21843 - qsu:112035093 971.844