Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02247 ATGGAGAGCTATTTGGCTGGAAATTTTGCGGACGTCAAGCCTAAGAATTCATCGGATGAAGCCCTTCAGAGATGGAGGAATTTGTGTTGGTTGGTGAAGAATAAGAAACGGAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGATATGAGGCCGAGGATATCCGACGCTTCAATAAGGAGAAGTTTAGAGTTGCAGTTCTGGTTTCACAAGCTGCCCTTCAATTTCTTGATGGTTTGTCAAAGGACTACACAGCACCAGAAGAGGTCAAAGCTGCCGGTTTTGGAATTGATGCTGAAGAACTAGCAACCATTGTTGACGGCCGAGATGTGAAGAAGCTCAAGATCCACGATGGTGTCGATGGTATTGCAAAAAAACTTTCCACATCAATAGCAGATGGCATTTCTACTTCGGAGCATTTGATCAAGAAGAGGAAAGATATATACGGAGTTAACAAGTTCACTGAACTCCCACCACGTGGTTTTTGGGTTTTCGTTTGGGAAGCCCTTCAGGATATGACTCTAATGATACTCGGAATTTGTGCAATTATGTCTCTTCTTGTTGGCATAGTAATGGAAGGATGGCCAAAGGGCGCTAATGATGGACTTGGAATTGTTGCAAGCATTTTGCTGGTTGTATTTGTTACTGCTACCAGTGACTATAAACAATCTCTTCAATTCAAGGATTTAGATAAAGAGAAGAAAAAAATAGCAATCCAGGTGACCAGAAACGGATTCAGACAAAAAATGTCGATATATGATCTCCTTCCTGGCGATATTGTTCATCTTGCCATTGGAGATCAGGTTCCGGCTGATGGACTTTTTATCTGTGGATTTTCTGTTCTGATCAATGAATCCAGTTTGACTGGTGAGAGCGAACCAGTTGATGTGAATTGTGACAAACCTTTTCTTCTCTCCGGTACAAAAGTTCAAGACGGATCGTGTAAGATGCTAGTTACTTCTGTCGGAATGAGAACCCAGTGGGGTAAGTTAATGGCTACTCTTTCCGAAGGAGGAGATGATGAAACTCCATTGCAGGTCAAACTAAATGGGGTGGCAACTATAATCGGAAAAATAGGTCTGTTTTTTGCTGTTGTCACTTTTGCTGTTTTGGTGCAAGGATTGTTTAGCCAGAAGTTACAAGAAGGGTCCCACTGGGTGTGGACCGGAGAAGATATGAGGCAAATTTTGGAATTCTTTGCTATTGCTGTCACGATAGTAGTGGTGGCAGTTCCCGAAGGGCTTCCTTTGGCTGTGACATTAAGTCTTGCTTTCGCCATGAAAAAGATGATGAATGACAAGGCACTTGTCAGGCATCTTGCAGCCTGTGAAACAATGGGATCTGCCACTACTATTTGTAGTGACAAAACTGGAACCTTAACAACTAACCGGATGACTGTTGTGAAAGCCTGCATTTGCTTTAAAGTCAAGGAAATTAACGGCCCTAAAGATGCTTCTAGTTACTGCTCCGAAATTCCATCTTCTGGTCTAAAGCTCCTGCTTCAATCCATATTCAATAACACTGGAGGAGAAATTGTGAAGAACAAAAACGGTGGGAATGAAATACTTGGGACACCAACTGAGTCTGCTCTTTTGGAATTCGGCCTCTCACTCGGTGGAGATTTTCAACACGAACGCCAAGTTGTTAAGATTGTGAGAGTTGAGCCTTTCAATTCTCTTAAGAAAAGAATGGGGTTAGTTATTGAACTTTCAGAAGGTGGCTTCCGGGCACACTCTAAAGGTGCTTCAGAGATAGTTTTAGCAGCATGTGACAAAGTCTTAGACCCAAATGGTGAAGTTGTTCCTCTTGATGAAACTTCAATCGATCTTTTAAATAATACAATTGAACAATTTGCCGGTGAAGCTCTTCGAACTCTTTGTCTCGCTTACATGGACGTTGGAAGTGAGTACAATGCTGGAAGTCCAATGCCTGTTAAGGGGTATACTTGCATTGGAATTGTGGGCATCAAAGATCCCGTTCGGCCTGGTGTCAAAGAATCCGTTGCAATTTGTAAGGCTGCTGGTATTGTTGTGAGAATGGTTACTGGAGATAATATAACGACTGCAAAGGCCATCGCCAGGGAATGTGGAATTTTGACTGACGATGGTATTGCCATTGAAGGTCCAGATTTCCGCCAGAAGAGTGAGGAAGAAATACACAAAATAATTCCGAAAATTCAGGTAATGGCTAGATCTTCACCTATGGATAAACATACTCTTGTGAAACATCTTCGCACCACTTTTCAAGATGTTGTTGCAGTGACCGGGGATGGCACAAATGATGCTCCTGCTCTTCATGAAGCAGATATAGGACTTGCAATGGGAATTGCTGGTACTGAGGTTGCAAAAGAGAGCGCTGATGTGATCATTTTGGATGATAATTTCTCGACTATTGTGACAGTGGCGAAATGGGGACGTTCGGTATATGTCAATATTCAGAAGTTCGTTCAGTTTCAGCTCACAGTAAATGTCGTAGCACTTCTGGTCAATTTTTCATCAGCTTGTTTGACAGGAAATGCTCCTCTCACAGCCGTTCAGCTTCTCTGGGTCAACATGATAATGGACACCCTCGGAGCCCTTGCACTGGCTACTGAGCCTCCAAACGACGACCTGATGAAACGATCACCAGTTGGCCGAAAAGGAAACTTCATCAATAATGTGATGTGGAGAAATATCTTAGGACAGTCTTTGTACCAGTTTGTCATCATTTGGTATCTCCAAACAAGAGGAAAAGCTCTTTTCCGCCTCACAGGTCCGGACTCCGATATGATCCTCAACACGCTTATTTTCAACTCTTTCGTCTTCTGTCAGGTTTTCAATGAGGTAAACTCTAGAGAGATGGAGAAGATAAATGTGTTTAAAGGTTTATTGAAGAACTACGTCTTTGTGGGAGTCCTCACTTGCACTGTTGTATTCCAAATCATAATAGTTCAGTTTCTGGGTACATTTGCAAGCACATCACCGTTAACTCTTCAGCAATGGGCAGTCTCCGTCTTCTTCGGATTCCTTGGCATGCCAGTTGCAGTAGCTCTGAAGATGATCCCTCATGGATCGGACTGA 3057 42.89 MESYLAGNFADVKPKNSSDEALQRWRNLCWLVKNKKRRFRFTANLSKRYEAEDIRRFNKEKFRVAVLVSQAALQFLDGLSKDYTAPEEVKAAGFGIDAEELATIVDGRDVKKLKIHDGVDGIAKKLSTSIADGISTSEHLIKKRKDIYGVNKFTELPPRGFWVFVWEALQDMTLMILGICAIMSLLVGIVMEGWPKGANDGLGIVASILLVVFVTATSDYKQSLQFKDLDKEKKKIAIQVTRNGFRQKMSIYDLLPGDIVHLAIGDQVPADGLFICGFSVLINESSLTGESEPVDVNCDKPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSQKLQEGSHWVWTGEDMRQILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKACICFKVKEINGPKDASSYCSEIPSSGLKLLLQSIFNNTGGEIVKNKNGGNEILGTPTESALLEFGLSLGGDFQHERQVVKIVRVEPFNSLKKRMGLVIELSEGGFRAHSKGASEIVLAACDKVLDPNGEVVPLDETSIDLLNNTIEQFAGEALRTLCLAYMDVGSEYNAGSPMPVKGYTCIGIVGIKDPVRPGVKESVAICKAAGIVVRMVTGDNITTAKAIARECGILTDDGIAIEGPDFRQKSEEEIHKIIPKIQVMARSSPMDKHTLVKHLRTTFQDVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFINNVMWRNILGQSLYQFVIIWYLQTRGKALFRLTGPDSDMILNTLIFNSFVFCQVFNEVNSREMEKINVFKGLLKNYVFVGVLTCTVVFQIIIVQFLGTFASTSPLTLQQWAVSVFFGFLGMPVAVALKMIPHGSD 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79646522 79656772 + Bma003100.1 Bma01g02247 76764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02247 1018 Pfam haloacid dehalogenase-like hydrolase 649 768 - -
Bma01g02247 1018 Pfam Cation transport ATPase (P-type) 513 592 - -
Bma01g02247 1018 SFLD Haloacid Dehalogenase 434 806 - -
Bma01g02247 1018 PANTHER CALCIUM-TRANSPORTING ATPASE 3 1015 - -
Bma01g02247 1018 Pfam Cation transporting ATPase, C-terminus 839 1013 IPR006068 -
Bma01g02247 1018 Gene3D - 449 799 IPR023214 -
Bma01g02247 1018 Pfam E1-E2 ATPase 237 430 - -
Bma01g02247 1018 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02247 1018 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02247 1018 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02247 1018 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Bma01g02247 1018 Gene3D - 139 335 - -
Bma01g02247 1018 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Bma01g02247 1018 SFLD p-type atpase 434 806 IPR044492 -
Bma01g02247 1018 CDD P-type_ATPase_Ca_PMCA-like 143 887 - -
Bma01g02247 1018 Pfam Cation transporter/ATPase, N-terminus 118 184 IPR004014 -
Bma01g02247 1018 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 385 472 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02247 1018 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 835 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma01g02247 1018 SUPERFAMILY HAD-like 450 859 IPR036412 -
Bma01g02247 1018 SMART Cation_ATPase_N_a_2 112 189 IPR004014 -
Bma01g02247 1018 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 663 IPR023299 GO:0000166
Bma01g02247 1018 SUPERFAMILY Calcium ATPase, transduction domain A 238 332 IPR008250 -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Bma01g02247 1018 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Bma01g02247 1018 PANTHER CATION TRANSPORTING ATPASE 3 1015 - -
Bma01g02247 1018 Gene3D - 462 658 IPR023299 GO:0000166
Bma01g02247 1018 Gene3D - 167 1012 - -
Bma01g02247 1018 Pfam Ca2+-ATPase N terminal autoinhibitory domain 7 50 IPR024750 GO:0005516
Bma01g02247 1018 Gene3D - 17 77 - -
Bma01g02247 1018 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 109 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02247 Bma04g00144 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02247 Bma-Chr1:79646522 Bma13g01184 Bma-Chr13:45120643 0 dispersed
Bma06g00464 Bma-Chr6:20620533 Bma01g02247 Bma-Chr1:79646522 1.69E-19 dispersed
Bma06g01032 Bma-Chr6:47128388 Bma01g02247 Bma-Chr1:79646522 0 transposed
Bma01g02247 Bma-Chr1:79646522 Bma04g00144 Bma-Chr4:1235599 0 wgd
Bma01g02247 Bma-Chr1:79646522 Bma06g00346 Bma-Chr6:7696879 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02247 K01537 - zju:107433706 1698.33