Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02249 ATGGAGTTTTTTAGAGCTTTTTGTGAAGGAGAGTGTCACTCATCAAGTTCATTAATTTCCCTTGAAGATTGGGTGGATTTTGTACCAGATTTTTTTGTTCAACATCCTTATTTTCTGGAGCATGAGGAACTGAGCTTCCCACCATTCACTGTCGGCAACAGTCATCAAGCCACTGTTGGTGTTGCAGGGATTAATGATTACTGGTTGCATTCTTTAGATTCTTTCAACACTGACTTCCACTGGAACAAACCAGAGAGTAGTCTTTGTGGTAATGGTAATAATAGTGTTTTAATATCTGGTTCACTGCATGAAGAAAAGTACCTTAATGGTTGTAATCAGGTTCCTACAGAAAACAATTTGTCGGTGATTCCACGTGATGGAATGGTGGATGAAGGCTCTTTATTCGCAGAATGGACTGAAGTTGTGCCTGATGGTACTGCTTGTGTTGATGAAGGTGTGGGCTATAAGAAATTTGAAAATCACGAGGAATCTGACGAGGGATTGCCCCTTAAAAGGAAATTTCATTGTCTAGAAGTTGAAAAAAGAGTTGATCATAAAAACACTACCAACTCATGTGACAACCTGAAGAAAAGAACTAAGATTTCACGGGATGGCCAGCATGACAGCAATACTGTAAAATCAAAGAAAGGCCAGAAGCACGCCCCAAAAGGGAAATCTGAAGAAGAGGGCAAAACTGTATCTGATGGACAGAGCTGTAGCAGTTCCAGCTCAGAAGAAGAGATTGCATCTTGTGAAAATAATGGAGAACCAACTTCAGAGTCTATGGCTAGTGCAGTAACAGTTTGTGGAAAGATTAGAGCAAGTAGAGGGTCAGCGACTGATCCCCAGAGTGTTTATGCAAAGAAAAGAAGAGAAAAAATTAACGAGCGGCTGAAAATCTTACAAACTCTTGTACCCAATGGAACAAAGGTTGACATTAGCACTATGCTCGAGGAAGCAGTCCAGTATGTGAAATTTTTGCAACTCCAAATTCAGCTTTTAAGCTCAGATGACTTGTGGATGTACGCTCCAGTGGCATTTGATATTGCTAGAGCTTGTACCGTTGGTCTGGCTGATATTTGTTGTGGTGTTTCTTCTGAGGTGCCAGCATCATCTGTCATTCAAGGCATTTGCTCTACTGTCTTTCAAAATGCACTCACCTTTTTTGTCTCCCCATTCGAAGGAAAGGATATCTTTCAGATTGTTGGTAAAGATGTTTTGAAGATTCAAGATTCTGCTGATATCTATGCTGAGCTGAAAGAAAAGTATGCGGACGAAGACGAAACCTCATTGGTTAAGCTCACCAAGTTTAGTGCGCTCAGTCTACTATGGGTTTTTTTTTCTTGTCCTAAAAACTTGCTGGCAGCTTGTTTTGAGCTTTTCAATTTGACTACAGACGGAGTACACAAAGAAGGATTATATTTTTTCACTCAAGTGACATGCAAACTTGACAATGCTGGAGCTCTTCAAATGGGTAAAAGAAGTGATAGAAGTGGTGGGCCTGAACCAGTCCATGATTCTATTTTGGCAAACAATAGGAACTGTGAAGTGGTTGAGGAGCACGCATCAGAAAACTGCTTGTTGGGCATGGTTCTTGGAAAAGATCGAATATTTCAAAGCTGGGTATTGTCAAAATACAAGAAGCTATGTTCAACGTCTTCTTCTTTCCATGGTTTATCAGATATTCAATCTGCGATGGACACAATTTTTTCATCATTTTATGAGGCAATGGAAGTAACAGATAGTCACAACTCGAGTGGTGAAGATCATTCTGATTTATCCTTATATGTGGGTCAACAATTTGGGAATAGGCTCTGCAAGCCATGTGACTTTTCCAATGAACTAGTGGGCAAAAATAGTAACTCAAGAGGTTCTGGTGGAACCATTAAAGATGGTGTCAGCAATATAGTTTCGGATCAACATCTTTTTGTAGCCAATCGTGATAATGTTTTCCACACAAATGCAGTAGGCTCAACTTGTAACAGTGGTGGTTCAAGGTCCAATGTTGAAACTCATGAGCCCAGTGACTTGTTTCATGGCAGGTTTACCATGCCCAAGGACCCGTTACTGGACCAGAAACCTTCACCTTTGACAAGAATCCCATTAGACGCAGAGAAGAATTCAATTGAAAGTATAAATCAACTAATAAATGTTGAGAAGAATCAAGTTACAAGTGCTGATCACAACTTTCCAGCTGTAAGATCTTCTAGTCGTGGCTTGGATAATGATTTTACATCTCCTAAACATCATTTTGCAATACCCAATACTCCCACCTCTACTCATGCTTTGTGGTACTCTGATGGGGATCCATCAGCCATGGATATCTTCTCTGCTTCTAAACAGCTCTGGGTGGGGTTTTTTGGCACTGATGTGCCTGAAGCTCATATAAGGTTTCAGTTTGACAGATTTGGCCCCATTGAAGATTTCTTATTTTTCCCGGTCAAAGGATTTGCTTTAATTGAGTACGTCCACATCATTGATGCTATTAGGGCAAGGGAACATAATCGTGGACAGTTTCAATGGTGTATTAAGTTCATGGATGTGGGTGTAGGGACTAGGGGTGCTCTCAATGGTGTTGCTGTTGGTTCTAGTCCTCATATTTATATTGGAAATGTTTCTGGCCAGTGGGAGAAGGATGAGATTTTGCATGAAACAAGGAAAGTACTCAACAAAATTCCGTACCTGGTCACTGATCTTAGCAGTGAAGGTACTTTGCTGATGGAATCTGAAACTCCCGAGGAAGCTGTTGCTGTGATGACACATCTAAGGCAGTATCGTAAAGAAAAGGGTTACCATTGTCCACCTTTAAATGCCAGACCAAGTAATGCTGCAATGCCTTATGTGGATTGTGGAAGAATAACATGTGCTTCAAGTCTTAGCGTCAGAAGTAATAATCCAGGATACACATGTAACGGTGGGATTGGATCACCTCATACTCCCATTGTGCCAGAGAGCCCTAGTGGAAGCTCCAGAACTAGGATGTCTGATTTACAGTCCCTTCTTTTTTCTCTACGTGTGAAATATAACATCAATCAAAATTCTGGTTATTTTGACAACTATATGTCTGGCAATTGCAATTATAACACCAAGAGGGAAGAAGAGAAAGTGCCATCTAGTACTCTCTGGATTAGTTTTCCTAATATAAACTTCCCTTTTGTCACCGATGATGAGTTAATGGCAATTTGCAATCTTGCTATTGCTAATACAGGATCTGTTGTAAGATTTGCTCGATCAAATATGCAGTCAGGTTGTGGTTGGTTTGTTGAGTGCAGTAGTATGGATGCTGCAATCACTGTATTGAAGAATCTACGAGGTTGTCCTGGAATTTTCCTTCGGTTAGAATTCAGTCATCCTGGAAATCATCATACCACACCATTACAAATTAAACATGAAAATCGCCCCACGGAGCTTGTGTCTCCCAGGATAAATTATGAGAATTCTGGATGTGCTTCACAAAGTGGACATTCCTACCAGCCAAATTGGGCTATTTCCAGTGGCCATGTTTCCACTGGTCCTGACCAAATTTGGACGCATAGGAAACCTGAAATGGATCTGCATCCACTGCCAGGGAGCATATCTTCTGTACCAATGGTAACACAAGGGCCTCCTCTGCCACCTCCACAACAAATTCAATCTTCTCCATTTATGCGACCTCTTTATCCCCCTCCAAATACTCCTTGGCCTGTGAGGGGTTTGAATCCTCATTTGCCTCTGAACCCTATATCACCAGGTGCAATGCCTAATACTTTTCCATGTCACGCAGTTGCAGCTCCTTTTGTACCTGCTTCCGTGACACCGCTTACTCAGATTCAGGGGACTCCAGTGCATCAGTTTGACAATATGTTTTCTCAGCCTGTTGCACCACCACGATTATCATCTTTACCACCACCTCAGCCTGAACTGCCACCTCCATTACCTCCTTCTCCACCCCCCTTACCCCAATCAGAGCCACCTCCCCTGCCACCTCCACCCAGTTCTCCCCCTCCCCTGCCAGCTCCACCAGCTGTAGAATCATCACAAATGGAAAGTTCTAGCCACTCGATGCAGTACCAATGGCAGGGCACACTTTGTAAAAGTGGAGTTCATTACTGCACAATATATGCACACAGAGTGGATTCAGAAATTTGCAAATATTCAAATTCCATTTCTGAGCCAACTGAATGGCCAGTGAAATTAGATATGACCAAACGCACAGATTTTCGGCATGTGAAGTCAACATTTTCTAGTGCTCCTCCACATAAAAGGGAGGTGTGTCAGCTGATTCCGTCTTCTGCAGGGAACAATAAAGGCTTTCAGGATTTTGTACTGTACTTGAAGCAGAGGGACTGTGCTGGAGTAATTAAGATACCAGCAACGAAATCCATCTGGGCTAGGCTTCTCTTTATAATTCCTTACTCGGAACACTCGTGTTCCATGCTCTCAATTTCACCTGGTCCAGCTGATAGCCTAATTGCTTTGGTTTTGCCTAAAGAAACTAACTCTGATTGGGCTTGA 4494 41.97 MEFFRAFCEGECHSSSSLISLEDWVDFVPDFFVQHPYFLEHEELSFPPFTVGNSHQATVGVAGINDYWLHSLDSFNTDFHWNKPESSLCGNGNNSVLISGSLHEEKYLNGCNQVPTENNLSVIPRDGMVDEGSLFAEWTEVVPDGTACVDEGVGYKKFENHEESDEGLPLKRKFHCLEVEKRVDHKNTTNSCDNLKKRTKISRDGQHDSNTVKSKKGQKHAPKGKSEEEGKTVSDGQSCSSSSSEEEIASCENNGEPTSESMASAVTVCGKIRASRGSATDPQSVYAKKRREKINERLKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIQLLSSDDLWMYAPVAFDIARACTVGLADICCGVSSEVPASSVIQGICSTVFQNALTFFVSPFEGKDIFQIVGKDVLKIQDSADIYAELKEKYADEDETSLVKLTKFSALSLLWVFFSCPKNLLAACFELFNLTTDGVHKEGLYFFTQVTCKLDNAGALQMGKRSDRSGGPEPVHDSILANNRNCEVVEEHASENCLLGMVLGKDRIFQSWVLSKYKKLCSTSSSFHGLSDIQSAMDTIFSSFYEAMEVTDSHNSSGEDHSDLSLYVGQQFGNRLCKPCDFSNELVGKNSNSRGSGGTIKDGVSNIVSDQHLFVANRDNVFHTNAVGSTCNSGGSRSNVETHEPSDLFHGRFTMPKDPLLDQKPSPLTRIPLDAEKNSIESINQLINVEKNQVTSADHNFPAVRSSSRGLDNDFTSPKHHFAIPNTPTSTHALWYSDGDPSAMDIFSASKQLWVGFFGTDVPEAHIRFQFDRFGPIEDFLFFPVKGFALIEYVHIIDAIRAREHNRGQFQWCIKFMDVGVGTRGALNGVAVGSSPHIYIGNVSGQWEKDEILHETRKVLNKIPYLVTDLSSEGTLLMESETPEEAVAVMTHLRQYRKEKGYHCPPLNARPSNAAMPYVDCGRITCASSLSVRSNNPGYTCNGGIGSPHTPIVPESPSGSSRTRMSDLQSLLFSLRVKYNINQNSGYFDNYMSGNCNYNTKREEEKVPSSTLWISFPNINFPFVTDDELMAICNLAIANTGSVVRFARSNMQSGCGWFVECSSMDAAITVLKNLRGCPGIFLRLEFSHPGNHHTTPLQIKHENRPTELVSPRINYENSGCASQSGHSYQPNWAISSGHVSTGPDQIWTHRKPEMDLHPLPGSISSVPMVTQGPPLPPPQQIQSSPFMRPLYPPPNTPWPVRGLNPHLPLNPISPGAMPNTFPCHAVAAPFVPASVTPLTQIQGTPVHQFDNMFSQPVAPPRLSSLPPPQPELPPPLPPSPPPLPQSEPPPLPPPPSSPPPLPAPPAVESSQMESSSHSMQYQWQGTLCKSGVHYCTIYAHRVDSEICKYSNSISEPTEWPVKLDMTKRTDFRHVKSTFSSAPPHKREVCQLIPSSAGNNKGFQDFVLYLKQRDCAGVIKIPATKSIWARLLFIIPYSEHSCSMLSISPGPADSLIALVLPKETNSDWA 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79661710 79671492 - Bma003102.1 Bma01g02249 76766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02249 1497 MobiDBLite consensus disorder prediction 1279 1347 - -
Bma01g02249 1497 Gene3D - 281 341 IPR036638 GO:0046983
Bma01g02249 1497 SMART finulus 284 333 IPR011598 GO:0046983
Bma01g02249 1497 CDD RRM3_Spen 782 851 - -
Bma01g02249 1497 MobiDBLite consensus disorder prediction 188 262 - -
Bma01g02249 1497 CDD bHLH_AtIND_like 279 341 - -
Bma01g02249 1497 PANTHER NUCLEIC ACID BINDING PROTEIN 345 1496 - -
Bma01g02249 1497 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 345 1496 - -
Bma01g02249 1497 MobiDBLite consensus disorder prediction 1289 1335 - -
Bma01g02249 1497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Bma01g02249 1497 MobiDBLite consensus disorder prediction 188 232 - -
Bma01g02249 1497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 341 IPR036638 GO:0046983
Bma01g02249 1497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 780 874 IPR000504 GO:0003723
Bma01g02249 1497 Pfam Helix-loop-helix DNA-binding domain 288 328 IPR011598 GO:0046983
Bma01g02249 1497 Pfam SPOC domain 1345 1473 IPR012921 -
Bma01g02249 1497 SUPERFAMILY RNA-binding domain, RBD 766 839 IPR035979 GO:0003676
Bma01g02249 1497 MobiDBLite consensus disorder prediction 233 262 - -
Bma01g02249 1497 Gene3D - 771 853 IPR012677 -
Bma01g02249 1497 Coils Coil 702 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02249 K18667 ASCC2; activating signal cointegrator complex subunit 2 - qsu:112027163 1182.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02249 Bma05g00057 CCT
Bma01g02249 Bma05g00057 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02249 Bma-Chr1:79661710 Bma05g00650 Bma-Chr5:38183512 1.05E-30 dispersed
Bma01g02249 Bma-Chr1:79661710 Bma05g00057 Bma-Chr5:2394198 1.88E-46 wgd
Bma01g02249 Bma-Chr1:79661710 Bma05g00069 Bma-Chr5:2542258 3.70E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g659 Blo01g01498 . Bda01g00587 . Bpe02g00449 . . Bma01g02249 Cmo05g00146 . . Cma09g00285 . . Sed05g2626 Cpe06g00195 Cpe07g00514 Bhi04g00411 Tan02g1022 Cmetu01g0392 . Hepe08g1329 . Lcy13g2130 Cla08g01617 Cam08g2119 Cec08g1704 Cco08g1827 Clacu08g1804 . Cre08g1586 . . . . Lsi04g01492 Csa04g02472 . Cme03g02098 Blo17g00860 Blo18g00720 . Bda01g01589 Bpe02g01776 Bpe05g00472 . Bma05g00057 Sed13g1799 . . Cma12g00596 Cma05g00143 Car05g00125 Car09g00239 Cpe11g00124 . Bhi09g03235 Tan01g4705 Cmetu07g1689 . Hepe01g1823 Mch11g0358 . Cla05g02102 Cam05g2254 Cec05g2274 Cco05g2315 Clacu05g2250 Cmu05g2113 Cre05g2237 Lsi08g01523 Csa02g01899 Chy07g00184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56782 PF07744 SPOC 1.10E-17 CL0616 Bma TF