Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02251 ATGAGCTGCAATGGCTGCAGAGTGCTGAGAAAGAGATGCGGCGAAACGTGCGTACTAAGATCGTGTTTGGTTTGGATCGACAGCGCCGAAGCACAAGGCCATGCCACTTTGTTTCTTGTTAAGTTCTACGGCCGAAGAGACCTTTTCTCCTTCATCACTGCCGCTCCTGATCAACAAAGACCCTCTTTATTTCGGTCTCTCCTCTTTGAAGCGTGCGGTCGGACGATAAACCCAGTGAGCGGAGTGGTGGGACTTTTTTCGACCGGTAAATGGCACGTTTGCGAAGCCGCTGTTCAATCAGTTCTCACCCACGGTTTTCTTCATCCGCTAAACGGAATTCTCCCCGGAGCTCCAATGCAGCAAGATATCTTAGACTTATCCATATCGTCGGGGAAATACAGTGGGAGCAATTATCAGCCGTCCGACCTCCAAATCTCTTTCCCAAATGACTCCGAGTCGGCGACGAACAAAAGTTCCATCCAGCAAAAGCTTTTAAATTTATTAGTTTGA 510 48.63 MSCNGCRVLRKRCGETCVLRSCLVWIDSAEAQGHATLFLVKFYGRRDLFSFITAAPDQQRPSLFRSLLFEACGRTINPVSGVVGLFSTGKWHVCEAAVQSVLTHGFLHPLNGILPGAPMQQDILDLSISSGKYSGSNYQPSDLQISFPNDSESATNKSSIQQKLLNLLV 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79682963 79683576 + Bma003104.1 Bma01g02251 76768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02251 169 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Bma01g02251 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 39-LIKE 1 137 - -
Bma01g02251 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 137 - -
Bma01g02251 169 Pfam Lateral organ boundaries (LOB) domain 2 102 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02251 Bma01g00676 CCT
Bma01g00676 Bma01g02251 ECH
Bma01g02251 Bma01g00676 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02251 Bma-Chr1:79682963 Bma15g01117 Bma-Chr15:44210380 5.92E-52 dispersed
Bma01g00676 Bma-Chr1:6168282 Bma01g02251 Bma-Chr1:79682963 1.14E-50 wgd
Bma01g02251 Bma-Chr1:79682963 Bma06g00353 Bma-Chr6:8119625 4.75E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56784 PF03195 LOB 1.10E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02251 - - mnt:21383826 194.126