Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02256 ATGGGTTATAACTACACTACCCTCGCTTGGGCTTCTTACGGCAAACACTGGCGGAATCTCCGACGAATCTCCTCCCTCCAACTTCTGTCCTCTGCCAATCTCCAGACTCTTTCTCATATACGAGCTGATGAGGTCCGATCGTTAATCTTCTGGCTGTCGAAATACCCAAACCAATTGGTGGATATGAGATCAGCACTTTTTGGATTACTACTAAATATCATAACTCGAATGATTGGAGGAAAGCGATACTACGGAGATGAAGTGGCGGACATAGAAAAAGCTGCAAGGTTCAAACATATTATTGAAGAATCACTTCTGTTACAGTCTGTGTCGAATGTAGCAGATTTTTTGCCATATTTGGGGTGGTTTGCAAGCAGACGGATGGAGAAGAAGTTGCAGGCGGTCCAGAAGGAGAGAGATAGCTTCGTGCAAAGCTTGTTAGAAAATCGTAGGAATTTGAGACCTTCTTCGGAAGAGAAGAAGAACACCATGATTGACGTTTTGCTGTCTCTGCAAGAATCTGAGCCGGAAATTACCGTTCTGCTAGCAGCAGGAACAGATACCTCAGTTGGAACCCTAGAGTGGGCGATGTCGTTTTTGCTTAACAACCCAGAAGTTCTGAAGAAAACAATGGCGGAAATAGACGATCGAGTGGGCCAAGAGCGCCTGATCAATGAATCAGATTTAGCCAACCTTCCTTACTTGCATTGCGTGATAAAGGAGACTCTGCGAATCAGCCCACCCGGGCCGCTACTGCCACACGAGTCATCCGCCGACTGCGTCGTGGGTGGCTTCAAGGTTCCACGTGGCACGCTTCTGATGGTGAACGTATGGGGCTTACAAAATGATCCAAGGTATTGGGAGGACCCCACAAGATTCGACCCGGATAGGTTCGTCGGATCAGAAGGGTTAAGAGATGGGTTCAAGTTTATACCATTTGGGTCGGGTAGAAGGGCTTGTCCAGGCGAAGGGTTAGCCATGCGAGTGGTTGGGTTGGCCTTGGGCTCCCTCGTTCAGTGCTTTGAGTGGGAGAGAGCGAGCAAGGAAATGGTGGATTTGAGGGAGGGAAATGGTCTTACCATGCCTAAGGCCATTCCTCTCAAAGCTAAGTGCCGCCCTCGTCCAATTACTCTTAAACTTCTCTCTCAAACATAA 1155 48.05 MGYNYTTLAWASYGKHWRNLRRISSLQLLSSANLQTLSHIRADEVRSLIFWLSKYPNQLVDMRSALFGLLLNIITRMIGGKRYYGDEVADIEKAARFKHIIEESLLLQSVSNVADFLPYLGWFASRRMEKKLQAVQKERDSFVQSLLENRRNLRPSSEEKKNTMIDVLLSLQESEPEITVLLAAGTDTSVGTLEWAMSFLLNNPEVLKKTMAEIDDRVGQERLINESDLANLPYLHCVIKETLRISPPGPLLPHESSADCVVGGFKVPRGTLLMVNVWGLQNDPRYWEDPTRFDPDRFVGSEGLRDGFKFIPFGSGRRACPGEGLAMRVVGLALGSLVQCFEWERASKEMVDLREGNGLTMPKAIPLKAKCRPRPITLKLLSQT 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79743735 79744988 - Bma003111.1 Bma01g02256 76773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02256 384 PRINTS P450 superfamily signature 237 248 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS P450 superfamily signature 311 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS P450 superfamily signature 320 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS P450 superfamily signature 184 201 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 310 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 173 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 193 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 69 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 276 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 236 254 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PRINTS E-class P450 group I signature 320 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 313 322 IPR017972 GO:0005506|GO:0016705
Bma01g02256 384 Pfam Cytochrome P450 12 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 PANTHER CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 5 1 383 - -
Bma01g02256 384 PANTHER CYTOCHROME P450 82C3-RELATED 1 383 - -
Bma01g02256 384 SUPERFAMILY Cytochrome P450 5 374 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bma01g02256 384 Gene3D Cytochrome P450 1 378 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02256 - - - vvi:100267741 471.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02256 Bma-Chr1:79743735 Bma09g00247 Bma-Chr9:10814839 2.91E-132 dispersed
Bma01g02256 Bma-Chr1:79743735 Bma06g00369 Bma-Chr6:9214069 1.43E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g686 . . . . . . . Bma01g02256 . . . Cma09g00271 . . . Cpe06g00187 . Bhi04g00395 . . . . . Lcy13g2119 . . . . . . . . . . . . Csa04g02459 . . . . . . . . . . . . Cmo09g00267 . . . . . . Bhi09g03252 . . . . Mch11g0343 . . . . . . . . . . Chy07g00173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000014 8 19 13 8 6 18 15 17 16 19 16 18 14 17 19 19 18 9 12 19 19 25 15 12 12 20 11 24 18 21 477