Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02260 ATGGGGTATACTTCTGCAATTTTGATTTTATCCAGTTGGTGGATGCACTGCCTTTTAATGGTGGCTTCTGCATCCGGTTTGAAGGGAGGCTCCTATCTCTCTGTGGAGAAGCAAGGGGACATTCTGGTTTCACCGAGTCGAGATTTCACAGCTGGCTTCTTCTCTGTCGGTGAAAATGCGTTTTGCTTCTCCATTTGGTTCAGTGAACCAGCAAAAATGGAACCCCGAACTGTTGTCTGGATGGCGAATCGCGAGTACCCTGTAAATGGAAAACAGTCGAAGCTCTCGCTCCTAAAAAGTGGGAATCTGATCCTCCATGATGCTGGTAATTACGTTGTTTGGGAGACCAAGACGGCCGCAATATCCTCTGTCTGGTTATGTCTCCACGATTCCGGTAATCTTGTTCTTTCTTCAGACGGAGATACTCTATGGCAAAGCTTTGATTTTCCAACGGACACTCTTTTACCCCTGCAACCTTTTACCAAAGTCACGCAGCTTGTTTCGTCAAGAACTGTCAGGAATGACTCATCTGGGTTTTACAAATTTTTCTTCGACGCCTTTAGCACCCTCCGCCTCATCTACGACACTCCGGCTGTTTCCAGTGTTTATTGGCACGACCCTTGGCTCATAAGTTGGAAGGCTGGCAGATCTACAAATAATAATACTAGGATTGCGATGCTCGATTCGTTGGGCGATTTCAGCTCCTCCGATAACTTCACGTTTAGGACAGCTGATTACGGAGTGAAGAATCAGAGAAGGTTGAGGATGGACGTGGATGGAAATATGCGAGTCTACAGCAGGGAGAAGGCCGGCGACAGGTGGGTAGTTTCTTGGCAAGCCATTCAAGAACCCTGCAAAATCCATGGAATTTGTGGGCCGAATAGTTTCTGTAAATACGTCCCCAGTTATGGCAGAATATGCTCTTGCATTATCGGACATAGGATGAAAGATGTGACCGACTGGTCTCTGGGCTGCAAACCGAAATTCAATCTCTCATTCAAGAATGACGACGACTTTGTCCTAATTCCTCGTGTTGAATTCTATGGCGATGCTCTTGGATACTTCCCGAAATACACTTATCAGCAGTGTAAGAATTTGTGTCTTCGTCTCAGTGGATGTATAGGTTTCCAGCTCTATTATGGCGATAATGACGCTTTTAACTGTTTCCCGAAAATAATTCTGCTAAATGGGTATCAATCGCCTTCTTACCGTGGAGATCTTTACATGAGGCTGCCAAAATCTGAATTGTCCACTTACAATTCTCCGATCGATGAGTTTCAGTGCTCATGCCCTTGCCCGGGAGTTATGGAAATCTCGCGAACATACATCAAGAACAAAGAAAATAAAACAGTGAAAGTAATCCTTTGGTTCATCGTCTGGCTAGGAGTGTTCGAACTGATCTGTGTAATTTTCGTCCGGTGGTTTTTGATCAGAACCCAGAGAAACTCAACTACAGATTACTTTCTCGCCTCGACGGGTTTCAAACGGTTCACCTTCGCCGAGCTGAAGAAGGCAACGAAGGATTTCAGCGAGGAAATAGGAAGGGGCGCCGGAGGAGTTGTGTACAAAGCAACACTCCCTGATCTTCGCGTGGCGGCGGTGAAGAGGCTGCCCGAGGTTAAGCAAGCAGAATCAGAGTTTCTCGCAGAAGCGAGCATAATCGGTAGACTTAACCATATGTACTTGATACAAATGTGGGGCTACTGCGCTGAGAAAAAACACAGACTCCTCGTTTACGAATTCATGGAGCATGGGTCGCTGGCCATTAATCTTTCTTCAAAAACGCTCGATTGGAAAAGAAGATTTGAAATCGCTGTAGGCACAGCAAAAGGGTTGGCTTATCTGCACGAAGAGTGCTTAGAATGGGTTCTCCATTGCGACGTCAATCCCCAAAATATTCTTCTGGATGCAAACTATTTACCAAAAGTTGCAGATTTTGGGATGTCGAAGCTTTTAAACAGAGGGGAACCTTCAAATTTAGGTTTCTCGAGGGTGAGAGGAACGAGAGGCTATATGGCTCCTGAATGGCTCTATAATTTGCCAATTACGTCTAAAGTGGATGTCTATAGCTATGGGGTCGTTTTGTTGGAGTTGGTGACCGGAAGGAGTCCAATGGAAAGCGTCCACGCCGGGGAGAGTGACGGAGAGAGAGAGCAGAGGCGGATGTTGGCGTGGATGAAAGGCAAAATCAACGACGGAGATGAAGTGGCGTCGTGGATGGAAGAGATCGTTGACCAATCATTGTCTGGAGATTATGACGTGGGAAAGATGGAAGCTTTGGTAAAAGTTGCTGTAAAATGCTTGAGGGAAGATAGAGATGAGAGACCTACTATGGGTCAAGTAGTTGAAATGCTTCTGTCATGA 2364 45.9 MGYTSAILILSSWWMHCLLMVASASGLKGGSYLSVEKQGDILVSPSRDFTAGFFSVGENAFCFSIWFSEPAKMEPRTVVWMANREYPVNGKQSKLSLLKSGNLILHDAGNYVVWETKTAAISSVWLCLHDSGNLVLSSDGDTLWQSFDFPTDTLLPLQPFTKVTQLVSSRTVRNDSSGFYKFFFDAFSTLRLIYDTPAVSSVYWHDPWLISWKAGRSTNNNTRIAMLDSLGDFSSSDNFTFRTADYGVKNQRRLRMDVDGNMRVYSREKAGDRWVVSWQAIQEPCKIHGICGPNSFCKYVPSYGRICSCIIGHRMKDVTDWSLGCKPKFNLSFKNDDDFVLIPRVEFYGDALGYFPKYTYQQCKNLCLRLSGCIGFQLYYGDNDAFNCFPKIILLNGYQSPSYRGDLYMRLPKSELSTYNSPIDEFQCSCPCPGVMEISRTYIKNKENKTVKVILWFIVWLGVFELICVIFVRWFLIRTQRNSTTDYFLASTGFKRFTFAELKKATKDFSEEIGRGAGGVVYKATLPDLRVAAVKRLPEVKQAESEFLAEASIIGRLNHMYLIQMWGYCAEKKHRLLVYEFMEHGSLAINLSSKTLDWKRRFEIAVGTAKGLAYLHEECLEWVLHCDVNPQNILLDANYLPKVADFGMSKLLNRGEPSNLGFSRVRGTRGYMAPEWLYNLPITSKVDVYSYGVVLLELVTGRSPMESVHAGESDGEREQRRMLAWMKGKINDGDEVASWMEEIVDQSLSGDYDVGKMEALVKVAVKCLREDRDERPTMGQVVEMLLS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79766295 79768658 + Bma003116.1 Bma01g02260 76777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02260 787 Gene3D Phosphorylase Kinase; domain 1 472 581 - -
Bma01g02260 787 Pfam D-mannose binding lectin 77 159 IPR001480 -
Bma01g02260 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 204 IPR036426 -
Bma01g02260 787 Pfam S-locus glycoprotein domain 235 315 IPR000858 GO:0048544
Bma01g02260 787 ProSiteProfiles Bulb-type lectin domain profile. 18 149 IPR001480 -
Bma01g02260 787 CDD B_lectin 42 150 IPR001480 -
Bma01g02260 787 Pfam Protein kinase domain 510 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02260 787 CDD STKc_IRAK 513 785 - -
Bma01g02260 787 PANTHER OS07G0415500 PROTEIN 6 786 - -
Bma01g02260 787 SMART blect_4 33 150 IPR001480 -
Bma01g02260 787 SUPERFAMILY Protein kinase-like (PK-like) 483 785 IPR011009 -
Bma01g02260 787 PIRSF SRK 2 787 IPR024171 GO:0004674
Bma01g02260 787 Gene3D - 24 147 IPR036426 -
Bma01g02260 787 ProSiteProfiles Protein kinase domain profile. 507 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02260 787 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Bma01g02260 787 Gene3D Transferase(Phosphotransferase) domain 1 582 787 - -
Bma01g02260 787 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 6 786 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02260 - - - jre:108987254 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02260 Bma-Chr1:79766295 Bma07g00250 Bma-Chr7:3030116 4.91E-96 dispersed
Bma01g02260 Bma-Chr1:79766295 Bma08g00603 Bma-Chr8:38037157 3.20E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g702 . . . Bda03g00196 . . . Bma01g02260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66299 PF00069 Pkinase 2.20E-51 CL0016 Bma PK