Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02264 ATGGCTGTGGAGCTCATGGTGGGTTTTGGGTGCAACGGTTTCTCCGCAAAAGTGGAGGAGGTTTCGGCTGTCTCCGCTGTACAAGAAGCGGCCTCTGCTGGTATTCAGGGGGTTGAGAATTTTCTCAGATTGATATCTAATGGATCCGATTCTCAGTTTCAAGAGCCATCTTCGAGTTTGAGCGTCGACGAAGTTGCAGACACGGTAGTCGATAAGTTCAAGAAGGTTATTTCGTTACTGGATCGTAACAGAACCGGCCACGCTCGATTCAGGAAGGCTCCGACGGTTCCTCCGCTGCAACAGCCTCAGAAGACGGACCAAGTTTCCGCTTTCAAGGCCTATTGTCGGACACCGGTGGCGCGTTTACCTCCTCTGCCTCACAATCCACCTACCTTCCAACCCCAGATAAACTCCTCTCATGTGGCGGTGAAGAATGGGTCTGCAGAGAGGAAGGAGACGACTGCTACCACTATTACTTTTGCCCCTTCGACTACCATTTCTGCTGCCAATTCGTTTATTTCGTCGCTAACAGGGGATTCTGAGGGTTTCCAGCCTTCGTTATCTTCTGGTTTTCAAATTACCTCGTCTTCTGGAAAGCCTCCACTATCTTCGTCTTTGCTGAAGAGGAAGTGTAACTCCATGGATGATGCTGCTGTCAAATGTGGCTCACCTTCTTCTCGATGCCACTGTTCAAAGAAAAGAAAAAATAGAATAAAGAGAGTGGTCAGAATTCCGGCAGTGAGCCAGAAAATGGCCGATATTCCGGCAGATGACTATTCGTGGAGAAAGTACGGCCAAAAACCCATCAAAGGCTCTCCTCATCCAAGGGGATACTACAAGTGCAGTAGTGTGAGAGGCTGCCCGGCAAGGAAACACGTAGAGCGTGCCGTAGACGATCCAGGGATGCTGATTGTAACTTACGAGAACGATCACAATCATGCCCACTCGATCACGGAAGCAGCAACGGCTGTTGAACCACGATGA 984 49.7 MAVELMVGFGCNGFSAKVEEVSAVSAVQEAASAGIQGVENFLRLISNGSDSQFQEPSSSLSVDEVADTVVDKFKKVISLLDRNRTGHARFRKAPTVPPLQQPQKTDQVSAFKAYCRTPVARLPPLPHNPPTFQPQINSSHVAVKNGSAERKETTATTITFAPSTTISAANSFISSLTGDSEGFQPSLSSGFQITSSSGKPPLSSSLLKRKCNSMDDAAVKCGSPSSRCHCSKKRKNRIKRVVRIPAVSQKMADIPADDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPGMLIVTYENDHNHAHSITEAATAVEPR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79806697 79807886 + Bma003120.1 Bma01g02264 76781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02264 327 Gene3D WRKY domain 241 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g02264 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 324 IPR044810 GO:0003700
Bma01g02264 327 SUPERFAMILY WRKY DNA-binding domain 253 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g02264 327 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g02264 327 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 19 324 - -
Bma01g02264 327 Pfam Plant zinc cluster domain 208 253 IPR018872 -
Bma01g02264 327 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g02264 327 Pfam WRKY DNA -binding domain 257 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02264 Bma04g00155 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02264 Bma-Chr1:79806697 Bma04g00033 Bma-Chr4:369663 2.63E-61 dispersed
Bma14g00891 Bma-Chr14:10081084 Bma01g02264 Bma-Chr1:79806697 1.81E-28 dispersed
Bma09g00258 Bma-Chr9:13682400 Bma01g02264 Bma-Chr1:79806697 1.41E-114 transposed
Bma09g00608 Bma-Chr9:43273074 Bma01g02264 Bma-Chr1:79806697 1.56E-67 transposed
Bma01g02264 Bma-Chr1:79806697 Bma04g00155 Bma-Chr4:1345202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56785 PF03106 WRKY 5.10E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02264 - - cmo:103493562 419.468