Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02267 ATGGAGGGAGAGTGTTATTCCAGAGTTTCTTCTTCGTCGTCTTCAACCTCCAGCACCGAGCAGAAGCGTAAGCAGAGGCAGCTCCTCCGAGAGCTCAAGCCCTACAGAGGAATTAGGATGCGGAAGTGGGGAAAATGGGTGGCGGAGATTAGAGAGCCAAATAAAAGGTCGAGGATTTGGCTGGGTTCTTACGTTACCCCCGTCGCAGCCGCCCGCGCTTACGACACCGCCGTCTTTTACCTCCGGGGACCCTCCGCCCGCTTGAATTTTCCGGAGCTCATATTCCGAGAAGAGCAGCCGCAAGATTTGTCCGCCGCTTCTATACGCAAAATAGCCACCGAAGTTGGGGCTAGAGTCGACGCCGTTCAAAGAGCTCTTCTTTCGTCGACCTCCGTTTCTACTCAGCTGCCAGAAAAGCCTGATTTGAACCAGTTTCCAAGCCCCGAAACTTCCGACGAAGATTGA 465 53.98 MEGECYSRVSSSSSSTSSTEQKRKQRQLLRELKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYVTPVAAARAYDTAVFYLRGPSARLNFPELIFREEQPQDLSAASIRKIATEVGARVDAVQRALLSSTSVSTQLPEKPDLNQFPSPETSDED 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79830359 79830823 + Bma003123.1 Bma01g02267 76784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02267 154 MobiDBLite consensus disorder prediction 130 147 - -
Bma01g02267 154 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Bma01g02267 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bma01g02267 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Bma01g02267 154 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Bma01g02267 154 MobiDBLite consensus disorder prediction 1 26 - -
Bma01g02267 154 PIRSF PTI6 4 151 IPR017392 GO:0003700
Bma01g02267 154 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 MobiDBLite consensus disorder prediction 1 22 - -
Bma01g02267 154 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Bma01g02267 154 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02267 Bma-Chr1:79830359 Bma03g01111 Bma-Chr3:14395237 5.18E-50 dispersed
Bma01g00656 Bma-Chr1:5967683 Bma01g02267 Bma-Chr1:79830359 1.14E-74 wgd
Bma01g02267 Bma-Chr1:79830359 Bma04g00157 Bma-Chr4:1351665 4.08E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56786 PF00847 AP2 6.50E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02267 K09286 - csv:101219005 212.616