Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02270 ATGTCGGAATCTATATCGATGGAGGTGCTAGTTGCTTCATCCTCTGCCGACTCTGGAATTGGCTGTTGGGACCTCCACACTGGCGCCGAACAACTGCGCTACAAGTCGTGCGTTTCTCCATCTCACGGCCTTGTCTGTGTTGGCCAACGTTTTCTCGCTTCCTCGCAGCTTCGAGACTCCTCTAGTTCTACTGGTTCTATTCTTTACTGGTCCTGGTCCAAGCCTCAAGTAGAAGTTAAGAGTTTCCCAGCGGAACCAATAATGCCGGTGGCTTCCACTAAAGACGGAACCTACATTGTTGGTGGGGGATTATCTGGAGATATTTTCTTGTGGGAGGTTTTATCTGGTAGATTGCTTAAGAAATGGCATGCTCATTACAGAGCGGTTACTTGCTTGGTATTTTCTGATGATGACTCGTTACTAGTGTCTGGATCAGAGGATGGATGCAGTAGAGTGTGGTCTCTTCTAATGTTGTTTGATGATGAGCGGCTAGAAAGGGGAAATAATCTGTATGAGCATAGTTTCTTTGAACATAATCTACGTATAACTGATATTGTCATTGGGTATGGAGGATCCAATGCGATAATAGTGTCAGCATCTGAGGACCGGACATGTAAGGTTTGGAGCTTGTCGATGGGGAGATTATTAAGAAGTATTCAATATCCTTCCGTAATTGATGCTGTTGCGTTGGACCCTGGAGAACATATTTTCTATGCTGGCGGTAGAGATGGGAAAATTTATATTTCTGCTCTTAATGCTAAAAGTGACACTAACAGCAAACATGGGTTGCATATCATCAGTTCGTTATCAAGTCACAGCAAAGCTGTCACTTGCTTGGCATATAGCATCAGTAGAAATTGGTTGATTTCTGGGTCGGAGGATGGAGTTATTCGAATTTGGGATGCTCAAACTCATAGTATTGTTCGTGTACTCAAACAAGCTAAAGGACCGGTGAGTAATTTATTTATTGTTAGGCGGCAAACTGGTGCGAATCCTCATCTTAATGTAAAATTTCAAGCTCCCTCAACTAGGCGTGGATCATTATTACCTCCTCCTTTGGCCAAATTTGAAAATTCAAAAAATGAGGATACAGAAGCTACTTCTGTCATAAATTTTGAAGGTTCTCACAAGAGAACGCTGGCTACTATGTATCTCAGTTCACAAGTAATTGACGATCAAATTAAAGAACTCCAGGTCCTTCCCTCACTGTATTTTTGTAGATTCTGCCTCTGTACATTTTTGGGTTTTTCGAATAGTATTTAG 1263 42.2 MSESISMEVLVASSSADSGIGCWDLHTGAEQLRYKSCVSPSHGLVCVGQRFLASSQLRDSSSSTGSILYWSWSKPQVEVKSFPAEPIMPVASTKDGTYIVGGGLSGDIFLWEVLSGRLLKKWHAHYRAVTCLVFSDDDSLLVSGSEDGCSRVWSLLMLFDDERLERGNNLYEHSFFEHNLRITDIVIGYGGSNAIIVSASEDRTCKVWSLSMGRLLRSIQYPSVIDAVALDPGEHIFYAGGRDGKIYISALNAKSDTNSKHGLHIISSLSSHSKAVTCLAYSISRNWLISGSEDGVIRIWDAQTHSIVRVLKQAKGPVSNLFIVRRQTGANPHLNVKFQAPSTRRGSLLPPPLAKFENSKNEDTEATSVINFEGSHKRTLATMYLSSQVIDDQIKELQVLPSLYFCRFCLCTFLGFSNSI 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79856374 79858954 + Bma003127.2 Bma01g02270 76787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02270 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 155 IPR001680 GO:0005515
Bma01g02270 420 SUPERFAMILY WD40 repeat-like 62 320 IPR036322 GO:0005515
Bma01g02270 420 SMART WD40_4 212 250 IPR001680 GO:0005515
Bma01g02270 420 SMART WD40_4 262 301 IPR001680 GO:0005515
Bma01g02270 420 SMART WD40_4 115 154 IPR001680 GO:0005515
Bma01g02270 420 SMART WD40_4 168 209 IPR001680 GO:0005515
Bma01g02270 420 SMART WD40_4 75 112 IPR001680 GO:0005515
Bma01g02270 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 155 - -
Bma01g02270 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
Bma01g02270 420 Gene3D - 222 326 IPR015943 GO:0005515
Bma01g02270 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 310 IPR001680 GO:0005515
Bma01g02270 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 304 - -
Bma01g02270 420 Pfam WD domain, G-beta repeat 266 301 IPR001680 GO:0005515
Bma01g02270 420 Pfam WD domain, G-beta repeat 117 154 IPR001680 GO:0005515
Bma01g02270 420 Pfam WD domain, G-beta repeat 177 209 IPR001680 GO:0005515
Bma01g02270 420 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Bma01g02270 420 Gene3D - 2 221 IPR015943 GO:0005515
Bma01g02270 420 PANTHER WD REPEAT-CONTAINING PROTEIN 18 7 374 - -
Bma01g02270 420 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Bma01g02270 420 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Bma01g02270 420 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Bma01g02270 420 PANTHER WD-REPEAT PROTEIN 18 7 374 IPR045227 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02270 K14829 IPI3; pre-rRNA-processing protein IPI3 - qsu:112029432 553.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02270 Bma-Chr1:79856374 Bma10g00598 Bma-Chr10:7311995 2.02E-30 dispersed
Bma01g02270 Bma-Chr1:79856374 Bma13g00489 Bma-Chr13:9172593 6.58E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g753 Blo01g01526 . Bda01g00570 . Bpe02g00431 . . Bma01g02270 . . . . . . . Cpe06g00165 . . . . . . . . . . . . . . . . . . . Lsi04g01549 Csa04g02420 . . . . . . . . . . Sed09g0365 . Cmo09g00230 . . . . . Cpe02g00186 Bhi09g03308 Tan01g4765 Cmetu07g1918 . Hepe01g1773 Mch11g0299 . Cla05g02050 Cam05g2202 Cec05g2219 . Clacu05g2194 Cmu05g2060 . . . Chy07g00141 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003200 1 2 2 1 1 1 1 1 1 1 1 1 2 1 2 3 1 2 2 1 1 1 2 1 2 1 3 2 8 1 50