Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02271 ATGGAGATAGTGGATCAGCTCAAGTCGGAGGATCAGATGGAGATTATGATGATGATGATGCATCAGACGGACAAGACTCGAGCATCTTGCGGCGCCTACAATGACATTGCTCAATTCTCACCGTCTGATTATGCTGGTGCAAGTGTCTGTGACAGCATCACAGCCGTCCCACATTGTTCTGACGGCTTTCAACCATCGTCTTATTCCTTCCTAAACTTTCCTTCTTCTTCTTCTTTCAAGAGTGCCAGCCCTCCTTTATCTACAGAGAAGCAGACGACATTTTCATCCGGGTGGGAGAGTGAATTATCAGTCGGAGAAAATGGCTTCTTCTCTTCACCTGATTCTGGGAGACCTACTTCAATGGCGACGATGAGGGAGATGATTTTCCGAATAGCGGCTATGCAGCCGATTCACATAGACCCAGAAGCGGTAAAGCCACCGAAACGGAGGAACGTGAAGATATCAAAAGACCCACAAAGCGTTGCGGCTCGGCATAGGAGAGAGAAGATAAGTGAGAGAATCAGAATTCTTCAGAGGATGGTACCAGGTGGAACAAAAATGGATACAGCTTCAATGTTAGACGAAGCTATTCATTACGTCAAATTTTTGAAGGGCCAAGTGCAGTCGCTGGAGAGGGCTGCAGCCAGCAGCCTGACTGGTATGGGGTACCCAATTGCAGTCTCTAATGGTGGCGGCAGCTATTTTCCTATGGCGAGGGATTTCCCATTGCCTCCTGGAATTTAG 744 47.85 MEIVDQLKSEDQMEIMMMMMHQTDKTRASCGAYNDIAQFSPSDYAGASVCDSITAVPHCSDGFQPSSYSFLNFPSSSSFKSASPPLSTEKQTTFSSGWESELSVGENGFFSSPDSGRPTSMATMREMIFRIAAMQPIHIDPEAVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRMVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAASSLTGMGYPIAVSNGGGSYFPMARDFPLPPGI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79860933 79861676 + Bma003128.1 Bma01g02271 76788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02271 247 Pfam Helix-loop-helix DNA-binding domain 163 203 IPR011598 GO:0046983
Bma01g02271 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Bma01g02271 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 212 IPR036638 GO:0046983
Bma01g02271 247 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 238 - -
Bma01g02271 247 SMART finulus 160 209 IPR011598 GO:0046983
Bma01g02271 247 MobiDBLite consensus disorder prediction 79 99 - -
Bma01g02271 247 Gene3D - 153 220 IPR036638 GO:0046983
Bma01g02271 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 238 IPR045843 GO:0003700|GO:0006355
Bma01g02271 247 CDD bHLH_AtIND_like 155 211 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02271 Bma05g00038 CCT
Bma01g02271 Bma05g00038 ECH
Bma01g02271 Bma04g00160 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02271 Bma-Chr1:79860933 Bma09g00395 Bma-Chr9:33200662 1.88E-40 dispersed
Bma03g00500 Bma-Chr3:3921481 Bma01g02271 Bma-Chr1:79860933 4.56E-13 transposed
Bma01g02271 Bma-Chr1:79860933 Bma04g00160 Bma-Chr4:1391143 2.86E-134 wgd
Bma01g02271 Bma-Chr1:79860933 Bma05g00069 Bma-Chr5:2542258 2.16E-18 wgd
Bma01g02271 Bma-Chr1:79860933 Bma05g00038 Bma-Chr5:2140989 6.18E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56788 PF00010 HLH 1.50E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02271 - - dzi:111314849 236.498