Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02277 ATGGCTGATTCCGCCGCTTCTCCGCTCAAGTCCGACGCTTTGCTCGATCAGATGAAGCATCACCTCGCCACTGATGCCGGAAAAGAACTCATCCAGAAGATCGGCCTTGTCTATCAGATTAATATTGCTCCTAAGAAAATTGGGGTTAACGAGGTGACTTACACTGTTGATCTCAAGAAAGGGGAAGTAAAGAAAGGGGCATACGAAGGCGGACAGGCAGATGCAACCTTTTCTTTCAAGGATGAAGATTTTGTGAAAGTTGCGTTGGGGCAAATGAATCCCCAGATAGCTTTCATGAGGCACGCCTTTTCTCCTACTTTGCATAACTCTTATCTGTTCATCAAGGGGAGTATCAGTGCAGCCCAGAAATTCACTCCCGACATTTTCCCCAAGCCTTCAAAGATG 405 46.67 MADSAASPLKSDALLDQMKHHLATDAGKELIQKIGLVYQINIAPKKIGVNEVTYTVDLKKGEVKKGAYEGGQADATFSFKDEDFVKVALGQMNPQIAFMRHAFSPTLHNSYLFIKGSISAAQKFTPDIFPKPSKM 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 79902006 79903519 + Bma030291 Bma01g02277 76794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02277 135 PANTHER SCP2 STEROL-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 5 135 - -
Bma01g02277 135 SUPERFAMILY SCP-like 6 135 IPR036527 -
Bma01g02277 135 Gene3D - 4 134 IPR036527 -
Bma01g02277 135 Pfam SCP-2 sterol transfer family 15 101 IPR003033 -
Bma01g02277 135 PANTHER STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN 5 135 IPR039543 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02277 - - - jre:108979542 196.052
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02235 Bma-Chr1:79407680 Bma01g02277 Bma-Chr1:79902006 6.26E-78 transposed
Bma01g02277 Bma-Chr1:79902006 Bma04g00165 Bma-Chr4:1417142 8.02E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g767 . Blo12g00956 . Bda03g00213 Bpe02g00426 Bpe04g00180 . Bma01g02277 . . Cma01g01841 . Car01g01435 . . . . . . . . . . . . . . . . . . Cone4ag1574 Cone7ag1377 . . Lsi04g01564 Csa04g02405 . . . . . . . . . . Sed13g1741 Cmo01g01900 . . . . . . Cpe02g00179 Bhi09g03329 Tan01g4796 Cmetu07g2318 . Hepe01g1759 Mch11g0285 . Cla05g02038 Cam05g2188 Cec05g2205 Cco05g2250 Clacu05g2181 Cmu05g2048 Cre05g2176 . . Chy07g00129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010444 2 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 31