Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02286 ATGCAGTCGAGCGGCTCTGATTCGCAGATGGCGCAGCAGCCGGAGCAGAATCAACGGCAACAATCACAGCAGCCGCTGCAGCAGCCGTGGATGGCGATGCAGTATCCTGCCGCGGCGATGGTAATGCAGCACCAGATGATACCTCCTCAGCATTACCTTCCCTCGATACCGCCGCACTACATGCCATACCATCAGTATCAGCCGCATCATTCGCTTATGCAACAAGGTCAGCAGCATCACCAGGGATCTTCAGGCGAGAACAAGACGATATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTACCTTCATACTTGCTTCGTTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACAGGTTTATCAGAAGGCTACGGATTTGTGGAATTTTATTCCCACGCAACTGCCGAGAAAGTTCTGCAGAACTACAATAGCATGTTTATGCCAAACACAGAACAACTTTTCCGCCTTAACTGGGCAACATTTAGCTCAGGAGAAAAGCGTTTAGATAATGGTCCTGATCTTTCTATCTTTGTAGGAGATTTAGCTGCAGATGTTACTGACAGTTTATTGCATGAAACTTTTGCCAGTAGATTTCCATCAGTTAAGGGTGCAAAAGTTGTGTTTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGGGACGATAATGAGAGATCACAGGCCATGACAGAGATGAATGGTGCTTATTGTTCAAGCAGACCTATGCGGATTGGTGCAGCAACGCCAAGGAAGTCCTCTGGATACCAGCAGCAATTTTCTTCCCAAGTAGGTGGATATGGATCAAATGGTTCCTTTACTCATGGTTTTCAATCTGAAGTTGATTCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGTCAGTGATGAAGACCTTAAGCAGCCTTTCTCTCAGTATGGCGAGATTGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTGCAATTCGCCAACAGAAATAATGCCGAGGAAGCTTTACAGAAATTAAATGGAACTCTGATTGGGAAGCAAACTTTCAGAGGTGATTTTGGGAACCAGTGGAATGGACCATACTATGGAGGCCAGGTTTATGATGGATATGGATATGCCATGGCTTCCCCTCACGATCCGGGCATGTATGGTACATCTGCCGCAACCTATGGAGCTTACCCTTTCTATGGAACCCATCAACAGCAAGTA 1245 45.7 MQSSGSDSQMAQQPEQNQRQQSQQPLQQPWMAMQYPAAAMVMQHQMIPPQHYLPSIPPHYMPYHQYQPHHSLMQQGQQHHQGSSGENKTIWVGDLHHWMDENYLHTCFVSTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYNSMFMPNTEQLFRLNWATFSSGEKRLDNGPDLSIFVGDLAADVTDSLLHETFASRFPSVKGAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYQQQFSSQVGGYGSNGSFTHGFQSEVDSTNTTIFVGGLDPNVSDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTLIGKQTFRGDFGNQWNGPYYGGQVYDGYGYAMASPHDPGMYGTSAATYGAYPFYGTHQQQV 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80048187 80050837 + Bma030293 Bma01g02286 76803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02286 415 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 23 414 - -
Bma01g02286 415 SUPERFAMILY RNA-binding domain, RBD 292 381 IPR035979 GO:0003676
Bma01g02286 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 253 IPR000504 GO:0003723
Bma01g02286 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 360 IPR000504 GO:0003723
Bma01g02286 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Bma01g02286 415 SMART rrm1_1 89 161 IPR000504 GO:0003723
Bma01g02286 415 SMART rrm1_1 297 364 IPR000504 GO:0003723
Bma01g02286 415 SMART rrm1_1 182 256 IPR000504 GO:0003723
Bma01g02286 415 CDD RRM3_NGR1_NAM8_like 295 362 - -
Bma01g02286 415 Gene3D - 87 167 IPR012677 -
Bma01g02286 415 CDD RRM2_SECp43_like 180 259 - -
Bma01g02286 415 CDD RRM1_SECp43_like 89 169 - -
Bma01g02286 415 Gene3D - 288 396 IPR012677 -
Bma01g02286 415 Gene3D - 169 287 IPR012677 -
Bma01g02286 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Bma01g02286 415 SUPERFAMILY RNA-binding domain, RBD 169 287 IPR035979 GO:0003676
Bma01g02286 415 MobiDBLite consensus disorder prediction 1 27 - -
Bma01g02286 415 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 414 - -
Bma01g02286 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Bma01g02286 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Bma01g02286 415 SUPERFAMILY RNA-binding domain, RBD 57 168 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02286 - - - cit:102622145 654.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02286 Bma04g00177 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02286 Bma-Chr1:80048187 Bma12g00469 Bma-Chr12:12498613 6.42E-160 dispersed
Bma02g01312 Bma-Chr2:55257842 Bma01g02286 Bma-Chr1:80048187 1.08E-11 dispersed
Bma01g02286 Bma-Chr1:80048187 Bma04g00177 Bma-Chr4:1500509 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g813 Blo01g01536 . Bda01g00562 . . . Bma04g00177 Bma01g02286 . Cmo12g00459 Cma01g01860 Cma09g00213 Car01g01448 . Sed01g0343 Cpe06g00147 Cpe07g00462 Bhi04g00313 Tan02g1894 Cmetu05g1832 . Hepe10g0703 . Lcy13g2033 . . . . . . . Cone4ag1559 Cone7ag1392 . . Lsi04g01583 Csa04g02386 . Cme03g02008 . . . . . . . . Sed01g2645 Cmo01g01919 Cmo09g00205 Cma12g00518 . . Car09g00180 . Cpe02g00165 Bhi09g03353 Tan01g4821 Cmetu11g2597 . Hepe01g1741 Mch11g0266 . Cla05g02019 Cam05g2169 Cec05g2185 Cco05g2233 Clacu05g2162 Cmu05g2030 Cre05g2158 Lsi08g01446 Csa02g01994 Chy07g00112 Cme04g00689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117