Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02302 ATGGTTAGTGGGTTTGGGGAGTCAACTAGCAGGCCATTCCAAAGCCCTTCTTTTTCTAATAACAACAGCAACAACAACAGTAACAACAATGATACTGGCAATTTTGAGTGCAATATTTGCTTTGACTTGGCTCAAGATCCTATTGTAACCTTATGCGGCCATCTTTTCTGCTGGCCATGCCTTTACAAGTGGCTCAATATTCACTCGCATTCCCATGAATGCCCAGTTTGCAAGGCTCTCGTTGAAGAGGAGAAGTTGGTTCCCTTATATGGTAGGGGAAAGACATCAACTGACCCAAGATCGAAATCAATTCCTGGCATTAATATTCCAAATCGCCCACCCGGACAGAGACCAGAAACAGCTCCTCCTCCAGAGACAACTCACTTTCCCCAGCATGGGTTTGCACCCATGGGAGGTTTGGGTGGATTTGCACCCATGGCAACTGCAAGAGTTGGTAACTTCACATTTTCTGCAGCTTTTGGTGGTCTTAGTCTTATCCCATCTTTGTTCAACCTTCATTTGCATGGCTTCCAAAATCCTGCGATGTATGGTCCAGCAGCTAATTTTTCTTACGGCTTTTCTCATTTGTTTCATGGAGGCGTTGCAAATAGATATGATAATCAAACTCGTCAAGGGCAACAGGATTATTTTCTGAAGAGGCTACTTTTAGTTATAGGATTCTTTGTTTTTCTTGCACTTATTTGGCAATAG 711 43.18 MVSGFGESTSRPFQSPSFSNNNSNNNSNNNDTGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLNIHSHSHECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPPGQRPETAPPPETTHFPQHGFAPMGGLGGFAPMATARVGNFTFSAAFGGLSLIPSLFNLHLHGFQNPAMYGPAANFSYGFSHLFHGGVANRYDNQTRQGQQDYFLKRLLLVIGFFVFLALIWQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80598059 80598769 - Bma003164.1 Bma01g02302 76819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02302 236 MobiDBLite consensus disorder prediction 91 126 - -
Bma01g02302 236 MobiDBLite consensus disorder prediction 111 125 - -
Bma01g02302 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Bma01g02302 236 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Bma01g02302 236 SUPERFAMILY RING/U-box 33 90 - -
Bma01g02302 236 SMART ring_2 37 77 IPR001841 -
Bma01g02302 236 PANTHER OS12G0636000 PROTEIN 3 236 - -
Bma01g02302 236 MobiDBLite consensus disorder prediction 1 27 - -
Bma01g02302 236 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Bma01g02302 236 CDD RING-HC_AtRMA_like 35 79 - -
Bma01g02302 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bma01g02302 236 Pfam Zinc finger, C3HC4 type (RING finger) 36 77 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02302 Bma04g00198 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02302 Bma-Chr1:80598059 Bma14g00232 Bma-Chr14:2800891 4.21E-31 dispersed
Bma10g00873 Bma-Chr10:16070908 Bma01g02302 Bma-Chr1:80598059 6.01E-20 dispersed
Bma10g00877 Bma-Chr10:16313481 Bma01g02302 Bma-Chr1:80598059 5.77E-20 dispersed
Bma03g01075 Bma-Chr3:13125784 Bma01g02302 Bma-Chr1:80598059 9.81E-92 transposed
Bma12g00986 Bma-Chr12:41897460 Bma01g02302 Bma-Chr1:80598059 2.09E-07 transposed
Bma15g00848 Bma-Chr15:21720597 Bma01g02302 Bma-Chr1:80598059 1.22E-93 transposed
Bma01g02302 Bma-Chr1:80598059 Bma04g00198 Bma-Chr4:1756226 1.20E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02302 K10666 - pop:7483773 352.829