Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02302 | ATGGTTAGTGGGTTTGGGGAGTCAACTAGCAGGCCATTCCAAAGCCCTTCTTTTTCTAATAACAACAGCAACAACAACAGTAACAACAATGATACTGGCAATTTTGAGTGCAATATTTGCTTTGACTTGGCTCAAGATCCTATTGTAACCTTATGCGGCCATCTTTTCTGCTGGCCATGCCTTTACAAGTGGCTCAATATTCACTCGCATTCCCATGAATGCCCAGTTTGCAAGGCTCTCGTTGAAGAGGAGAAGTTGGTTCCCTTATATGGTAGGGGAAAGACATCAACTGACCCAAGATCGAAATCAATTCCTGGCATTAATATTCCAAATCGCCCACCCGGACAGAGACCAGAAACAGCTCCTCCTCCAGAGACAACTCACTTTCCCCAGCATGGGTTTGCACCCATGGGAGGTTTGGGTGGATTTGCACCCATGGCAACTGCAAGAGTTGGTAACTTCACATTTTCTGCAGCTTTTGGTGGTCTTAGTCTTATCCCATCTTTGTTCAACCTTCATTTGCATGGCTTCCAAAATCCTGCGATGTATGGTCCAGCAGCTAATTTTTCTTACGGCTTTTCTCATTTGTTTCATGGAGGCGTTGCAAATAGATATGATAATCAAACTCGTCAAGGGCAACAGGATTATTTTCTGAAGAGGCTACTTTTAGTTATAGGATTCTTTGTTTTTCTTGCACTTATTTGGCAATAG | 711 | 43.18 | MVSGFGESTSRPFQSPSFSNNNSNNNSNNNDTGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLNIHSHSHECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPPGQRPETAPPPETTHFPQHGFAPMGGLGGFAPMATARVGNFTFSAAFGGLSLIPSLFNLHLHGFQNPAMYGPAANFSYGFSHLFHGGVANRYDNQTRQGQQDYFLKRLLLVIGFFVFLALIWQ | 236 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 80598059 | 80598769 | - | Bma003164.1 | Bma01g02302 | 76819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02302 | 236 | MobiDBLite | consensus disorder prediction | 91 | 126 | - | - | |
Bma01g02302 | 236 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Bma01g02302 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 91 | IPR013083 | - | |
Bma01g02302 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 78 | IPR001841 | - | |
Bma01g02302 | 236 | SUPERFAMILY | RING/U-box | 33 | 90 | - | - | |
Bma01g02302 | 236 | SMART | ring_2 | 37 | 77 | IPR001841 | - | |
Bma01g02302 | 236 | PANTHER | OS12G0636000 PROTEIN | 3 | 236 | - | - | |
Bma01g02302 | 236 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bma01g02302 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 52 | 61 | IPR017907 | - | |
Bma01g02302 | 236 | CDD | RING-HC_AtRMA_like | 35 | 79 | - | - | |
Bma01g02302 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 3 | 236 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bma01g02302 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 36 | 77 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02302 | Bma04g00198 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02302 | Bma-Chr1:80598059 | Bma14g00232 | Bma-Chr14:2800891 | 4.21E-31 | dispersed | |
Bma10g00873 | Bma-Chr10:16070908 | Bma01g02302 | Bma-Chr1:80598059 | 6.01E-20 | dispersed | |
Bma10g00877 | Bma-Chr10:16313481 | Bma01g02302 | Bma-Chr1:80598059 | 5.77E-20 | dispersed | |
Bma03g01075 | Bma-Chr3:13125784 | Bma01g02302 | Bma-Chr1:80598059 | 9.81E-92 | transposed | |
Bma12g00986 | Bma-Chr12:41897460 | Bma01g02302 | Bma-Chr1:80598059 | 2.09E-07 | transposed | |
Bma15g00848 | Bma-Chr15:21720597 | Bma01g02302 | Bma-Chr1:80598059 | 1.22E-93 | transposed | |
Bma01g02302 | Bma-Chr1:80598059 | Bma04g00198 | Bma-Chr4:1756226 | 1.20E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02302 | K10666 | - | pop:7483773 | 352.829 |