Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02319 ATGGCAATCGCTCGACTCGCTCGACAGGCTAAACGCCCTTATGGGTTCTATGCGAAGATGACCGGAGTGGCCCTCTTGGGATTTTGCTTTATTGTTGTTTGGTCCATTTTTTCTTCTTCTTCCTCCTCTATAACTACCCAGAGGGAAAGCTTCGACGACATTGGCGAACCAGTATCTGGAAATACAAGGGTGAATAACTTTAAATCGGGCATTCAAACTGACGATAAGAAGGAAAGTAATAAGCATGAAGCGAGCAAGGATAAGTCTACAGTTAAACCTGATTTGGATAGTAAGGATGTATCAAAGGTTAATCAGCCTTCTTCTCCTTCTGCAAATGAGCCTGAATCTGGTAAAGAACATAGTAAAGAGGCAAATGGGAAAAATGACAAACAGAAGGGAAAGCTAAAGGATGGGGAAACAAAAGAGAATCACGGGTCAGAAGAATCTGAGGGTAAAGACTCTAAGAACGAGAATGAAGAGGATGAAGAAGTAGAAGATGGGAAAGGAGAAGAAGTTTCCGACAATGGCAAAACGGAAACAGAAGGTGATCTTGTCGAGCCAGTGGATCACAGAGCTGAAGAGACCAACGAGCCAATAACTAAAATAATGTTCAATAACGTGGCGCATCCGAAACTGGCTGCATTTGTGAAGAAACATGATTGGTTGATGGATGTCGGAGAATTTCTTACGTTTCCTCAGAATCAGACGGAGTTCAAGGGCGGAATTCTTCACTACCTTGAATCCATCGAAGAGATGGTACCAGATATTGAGTGGGGAAAGAATATCCGTGTAATACTAGAAATCGGTTGTACAGATTCGAGTTTGGGCGTTTCCCTCCTCGATAAGGATGTCTTAACATTATCACTGGGCTTGAAGGACGACTTGGTCGACTTAGCCCAAGTTACGCTTGAGCGAGGAATTCCCGCCATAGTCAGTCCTTTCGGAAGTAGAAGACTTCCTTTTCCTAGTGGCGTATTTCGATGCTATTCATTGTGGCGGGTGCAGCATATCGTGGCAATCCAATGGTTTTCGTCTCTTCTTTTTCTTTTCTTCCTTCTTCAGATACTCTCATTTCTTCTGACTTCACTTAGTTTTTGTCTGGTTTCAGGTGGTAAGCTGCTACTAGAAATGAACCGGATTTTAAGACCAGCTGGATATTTCATTTTGTCGTCTAAGCATGACTCCATTGAAGACGAAGAAGCCATGTCTACATTAACAGCATCGATCTGTTGGAACATCTTGGCTCATAAAACCGATGATGTCATTGAAGTCGGTGTTAAGATATATCAGAAGCCCGAGTCAAATGATATATATGAGTTGAGAAGGAAGAAGAATCCTCCCCTTTGCAAGGAAAATGAAAATCCAGATGCAGCTTGGTATTTTCCTATTAGAAGTTGCCTACACCCCATTCCGTCTTCCATCGAAGAACACGGAGCAGAGTGGCCGGAGGAATGGCCTAAGAGGCTGGAAACATACCCTGATTGGTTTAGCAACAAAGAAAAGGTAATTGCAGATACCGGCCACTGGAAAGCAATTGTCGACAAGTCCTATCTCTCCGGAATCGGTATCGACTGGTCTCGAGTTAGGAATGTGATGGACATGAAAGCTATCTATGGAGGATTTGCAACAGCTCTCACAGATCAGAAGGTGTGGGTGATGAATGTCATCCCCATCCACGCACCCGATACGCTTCCGATAATTTTTGAACGTGGCTTGGTTGGCGTCTACCATGATTGGTGCGAGTCTTTTGGTACTTATCCTCGATCGTACGATCTTTTGCATGCCGATCATCTTTTCTCGCGTCTGAAGAACAGGTGCAGAGAACCTGTATCGATCATTGTCGAGATGGATCGAATATTACGGCCAGGAGGGTGGGCAATCATCCGAGAAAAAGTCGAAATATTGAATCCTATAGAGACGATACTAAGGAGTCTGAGTTGGGAAATCCAGATGACGTTTTATCAAGATAAGGAGGGTGTTTTGTGTGCCAAGAAAACTTCATGGCGGCCATAG 2013 43.82 MAIARLARQAKRPYGFYAKMTGVALLGFCFIVVWSIFSSSSSSITTQRESFDDIGEPVSGNTRVNNFKSGIQTDDKKESNKHEASKDKSTVKPDLDSKDVSKVNQPSSPSANEPESGKEHSKEANGKNDKQKGKLKDGETKENHGSEESEGKDSKNENEEDEEVEDGKGEEVSDNGKTETEGDLVEPVDHRAEETNEPITKIMFNNVAHPKLAAFVKKHDWLMDVGEFLTFPQNQTEFKGGILHYLESIEEMVPDIEWGKNIRVILEIGCTDSSLGVSLLDKDVLTLSLGLKDDLVDLAQVTLERGIPAIVSPFGSRRLPFPSGVFRCYSLWRVQHIVAIQWFSSLLFLFFLLQILSFLLTSLSFCLVSGGKLLLEMNRILRPAGYFILSSKHDSIEDEEAMSTLTASICWNILAHKTDDVIEVGVKIYQKPESNDIYELRRKKNPPLCKENENPDAAWYFPIRSCLHPIPSSIEEHGAEWPEEWPKRLETYPDWFSNKEKVIADTGHWKAIVDKSYLSGIGIDWSRVRNVMDMKAIYGGFATALTDQKVWVMNVIPIHAPDTLPIIFERGLVGVYHDWCESFGTYPRSYDLLHADHLFSRLKNRCREPVSIIVEMDRILRPGGWAIIREKVEILNPIETILRSLSWEIQMTFYQDKEGVLCAKKTSWRP 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80708513 80711578 - Bma003181.2 Bma01g02319 76836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02319 670 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 198 327 IPR004159 GO:0008168
Bma01g02319 670 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 201 327 IPR004159 GO:0008168
Bma01g02319 670 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 369 665 IPR004159 GO:0008168
Bma01g02319 670 MobiDBLite consensus disorder prediction 154 169 - -
Bma01g02319 670 MobiDBLite consensus disorder prediction 170 190 - -
Bma01g02319 670 MobiDBLite consensus disorder prediction 115 153 - -
Bma01g02319 670 MobiDBLite consensus disorder prediction 100 114 - -
Bma01g02319 670 MobiDBLite consensus disorder prediction 48 190 - -
Bma01g02319 670 PANTHER METHYLTRANSFERASE PMT28-RELATED 198 327 - -
Bma01g02319 670 MobiDBLite consensus disorder prediction 70 99 - -
Bma01g02319 670 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 223 433 IPR029063 -
Bma01g02319 670 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 470 630 IPR029063 -
Bma01g02319 670 PANTHER METHYLTRANSFERASE PMT28-RELATED 369 670 - -
Bma01g02319 670 PANTHER METHYLTRANSFERASE PMT28-RELATED 9 182 - -
Bma01g02319 670 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 369 670 IPR004159 GO:0008168
Bma01g02319 670 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 9 182 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02319 - - - jre:108982991 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02319 Bma-Chr1:80708513 Bma06g00432 Bma-Chr6:16326767 3.81E-06 dispersed
Bma09g00097 Bma-Chr9:2610934 Bma01g02319 Bma-Chr1:80708513 2.01E-139 dispersed
Bma01g02319 Bma-Chr1:80708513 Bma15g00971 Bma-Chr15:37348904 1.24E-153 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g941 Blo01g01561 . Bda01g00531 . Bpe02g00393 . . Bma01g02319 . . Cma01g01907 . Car01g01489 . . . . . . . . . . . . . . . . . . Cone4ag1910 Cone7ag1824 . . Lsi04g01660 Csa03g04205 Chy04g00513 . . . . . . . . . . Cmo01g01970 . . . . . . Cpe02g00129 . . . . . . . Cla05g01944 Cam05g2087 Cec05g2100 Cco05g2154 Clacu05g2082 Cmu05g1958 Cre05g2077 . . . Cme04g00572
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 4 1 35